View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_90 (Length: 294)
Name: NF19103_high_90
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_90 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 52390971 - 52390707
Alignment:
| Q |
17 |
ttaatattgttagctgcatccatatatattttctctacccttgaatcattgcacaagttacagcttaaaaaatgtttatgaaacaaagcaactagtatag |
116 |
Q |
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| T |
52390971 |
ttaatattgttagctgcatccatatatattttctctacccttgaatcattgcaaaagttacagcttaaaaaatgtttatgaaacaaagcaactagtatag |
52390872 |
T |
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| Q |
117 |
cattgagctgcaattattgcaacacttccatctcatcaaactgcaattgtgtatgcctattaacgtaattttcatcgctttcaggcattatacattagtt |
216 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
52390871 |
cattgagatgcaattattgcaacacttccatctcatcaaactgcaattatgtatggctattaacgtagttttcatcgctttcaggcattatgcattagtt |
52390772 |
T |
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| Q |
217 |
tgaagatggttttcttgacaaatgatacataaaccaaagacgaatagaaaatgcaacttggagaa |
281 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
52390771 |
tgaagatggttttcttgacaaatgacacataaactaaagacgaatagaaaatgcaacttggagaa |
52390707 |
T |
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