View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_high_95 (Length: 287)
Name: NF19103_high_95
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_high_95 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 1533831 - 1534101
Alignment:
| Q |
1 |
caataaatgaaaacatattagttatgtgaaaagatgtatatgatcaaagaaaataaagacattgttgcataatcaataacaaaagcaaaacgactgaata |
100 |
Q |
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| T |
1533831 |
caataaatgaaaacatattagttatgcgaaaagatgtatatgatcaaagaaaataaagacattgttgcataatcaataacaaaagcaaaacgactgaata |
1533930 |
T |
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| Q |
101 |
aagacaacgatgccataatcactaacgaaagcaaaaagactgcaccgtggatttgacttaaaacaaattagagaaaagtacaagagtttcgacaagtaac |
200 |
Q |
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| T |
1533931 |
aagacaacgatgccataatcactaacgaaagcaaaaagactgcaccgtggatttgacttaaaacaaattagagaaaagtacaagagtttcgacaagtaac |
1534030 |
T |
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| Q |
201 |
ataaagtccaactccatagtgaaaaatcaaggaaatggtaaattggtatttcatgaaaacgtatataaaca |
271 |
Q |
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| T |
1534031 |
ataaagtccaactccatagtgaaaaatcaaggaaatggtaaattggtatttcatgaaaacgtatataaaca |
1534101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 1139946 - 1139678
Alignment:
| Q |
1 |
caataaatgaaaacatattagttatgtgaaaagatgtatatgatcaaagaaaataaagacattgttgcataatcaataacaaaagcaaaacgactgaata |
100 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
1139946 |
caataaatgatattatattagttatgtgaaaagatgtatatgatcaaagaaaataaagacattgttgcataatcaataacaaaagcaaaacaactaaatc |
1139847 |
T |
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| Q |
101 |
aagacaacgatgccataatcactaacgaaagcaaaaagactgcaccgtggatttgacttaaaacaaattagagaaaagta-caagagtttcgacaagtaa |
199 |
Q |
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|||||| ||||||||||||||| ||| || | ||||||||| || |||| | |||||| ||||||||||||||||||| |||||||||| |||||||| |
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| T |
1139846 |
aagacagcgatgccataatcaccaacaaacgaaaaaagactacaatgtgggtgtgactt--aacaaattagagaaaagtaccaagagtttctacaagtaa |
1139749 |
T |
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| Q |
200 |
cataaagtccaactccatagtgaaaaatcaaggaaatggtaaattggtatttcatgaaaacgtatataaaca |
271 |
Q |
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|||||| ||||||||| ||||||||| ||||| || |||||||||||||||||| |||| ||||||||||| |
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| T |
1139748 |
cataaaaaccaactccagagtgaaaaaccaagg-aagggtaaattggtatttcataaaaaggtatataaaca |
1139678 |
T |
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