View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_high_97 (Length: 279)

Name: NF19103_high_97
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_high_97
NF19103_high_97
[»] chr3 (8 HSPs)
chr3 (11-231)||(25203884-25204104)
chr3 (119-254)||(25203649-25203784)
chr3 (147-233)||(25203829-25203915)
chr3 (119-231)||(25203725-25203837)
chr3 (120-238)||(25200059-25200177)
chr3 (145-256)||(25203394-25203505)
chr3 (131-205)||(25203392-25203466)
chr3 (165-262)||(25203747-25203844)
[»] chr2 (6 HSPs)
chr2 (128-262)||(18484032-18484166)
chr2 (117-253)||(35711690-35711825)
chr2 (112-178)||(18483110-18483176)
chr2 (119-233)||(35711744-35711858)
chr2 (185-222)||(11879964-11880001)
chr2 (172-233)||(18483108-18483169)
[»] chr7 (3 HSPs)
chr7 (165-233)||(31861114-31861182)
chr7 (130-262)||(28950537-28950668)
chr7 (172-204)||(35153529-35153561)
[»] chr6 (1 HSPs)
chr6 (117-223)||(8037643-8037748)
[»] chr4 (7 HSPs)
chr4 (112-190)||(39290068-39290146)
chr4 (119-192)||(3343531-3343604)
chr4 (172-245)||(3343737-3343810)
chr4 (172-238)||(3343538-3343604)
chr4 (172-238)||(43108066-43108132)
chr4 (112-192)||(3343737-3343817)
chr4 (149-233)||(43108243-43108327)
[»] chr5 (2 HSPs)
chr5 (172-217)||(12513055-12513100)
chr5 (172-208)||(18960693-18960729)
[»] chr8 (2 HSPs)
chr8 (165-233)||(9321443-9321511)
chr8 (160-189)||(39898223-39898252)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 25204104 - 25203884
Alignment:
11 cagagacactctcttatgaaacactcacttttgatttctaatggttgaataatgaacagaatgaattttgatctcctatttgtaagagtatgaaaactaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
25204104 cagagacactctcttatgaaacactcacttttgatttctaatggttgaataatgaacagagtgaattttgatctcctatttgtaagagtatgaaaactaa 25204005  T
111 aaggattacatgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagtgtcaagaggaatacatgcatca 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||| ||    
25204004 aaggattacatgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagtgtcctgaggagtacatgcaaca 25203905  T
211 aaccaattgttattcatgcaa 231  Q
      |||| ||| ||||||||||    
25203904 tgccaaatgtcattcatgcaa 25203884  T

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Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 119 - 254
Target Start/End: Complemental strand, 25203784 - 25203649
Alignment:
119 catgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaatt 218  Q
    |||||||| |||||||||||||||  ||  |||||||||  |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
25203784 catgcaataaaccaagtgtcaagaggaaagcatgcaacaaaccaattgttattcatgcaacaaactaagtgtcaagatgaatacatgcatcaaaccaatt 25203685  T
219 gttattcatgcaatacaccatatgtcaagaggaatg 254  Q
    ||||||||||||||||||||||||||||||||||||    
25203684 gttattcatgcaatacaccatatgtcaagaggaatg 25203649  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 233
Target Start/End: Complemental strand, 25203915 - 25203829
Alignment:
147 tacatgcaacatgccaaatgttattcatgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaattgttattcatgcaata 233  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| | |||| |||||| |  ||| ||| ||||||||||||||||    
25203915 tacatgcaacatgccaaatgtcattcatgcaacaaactaagtgtccaaaggagtacatgtagaaaatcaagtgttattcatgcaata 25203829  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 231
Target Start/End: Complemental strand, 25203837 - 25203725
Alignment:
119 catgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaatt 218  Q
    |||||||| | |||||||  | || ||||||||| | || | ||| |||||||||||||| |||| |||||||||||||||  |||||| ||||||||||    
25203837 catgcaataacccaagtgcaatgacaaatacatgaatcaagtcaagtgttattcatgcaataaaccaagtgtcaagaggaaagcatgcaacaaaccaatt 25203738  T
219 gttattcatgcaa 231  Q
    |||||||||||||    
25203737 gttattcatgcaa 25203725  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 25200177 - 25200059
Alignment:
120 atgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaattg 219  Q
    ||||||| || || |||||||||  || ||||||| || |  || |||||||||||||| |||||||||||||| || ||||||| |  |||||||| ||    
25200177 atgcaataaatcacgtgtcaagaggaacacatgcatcaagttaagtgttattcatgcaaaaaactaagtgtcaatagaaatacataccacaaaccaagtg 25200078  T
220 ttattcatgcaatacacca 238  Q
    |||||||| ||||| ||||    
25200077 ttattcattcaataaacca 25200059  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 25203505 - 25203394
Alignment:
145 aatacatgcaacatgccaaatgttattcatgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaattgttattcatgcaatacaccatatgtc 244  Q
    |||||||||||   ||||| |||||| ||| ||| |||  ||||||||| | ||||||| ||| ||| |||| ||||||||||| |||| |||| |||||    
25203505 aatacatgcaaatagccaagtgttatccatccaataaatcaagtgtcaacatgaatacacgcaacaagccaaatgttattcatgtaataaaccaaatgtc 25203406  T
245 aagaggaatgca 256  Q
    ||||| ||||||    
25203405 aagagtaatgca 25203394  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 25203466 - 25203392
Alignment:
131 caagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagtgtcaagaggaatacatg 205  Q
    |||||||||| || |||||| |||||| ||||||||||||||||| || |||| || ||||||||| ||| ||||    
25203466 caagtgtcaacatgaatacacgcaacaagccaaatgttattcatgtaataaaccaaatgtcaagagtaatgcatg 25203392  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 25203844 - 25203747
Alignment:
165 tgttattcatgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaattgttattcatgcaatacaccatatgtcaagaggaatgcaagcaac 262  Q
    |||||||||||||| || | |||||  | ||  |||||||| |||||  ||| |||||||||||||||| ||||  |||||||||||| ||| |||||    
25203844 tgttattcatgcaataacccaagtgcaatgacaaatacatgaatcaagtcaagtgttattcatgcaataaaccaagtgtcaagaggaaagcatgcaac 25203747  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 262
Target Start/End: Complemental strand, 18484166 - 18484032
Alignment:
128 aaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaattgttattcat 227  Q
    |||||| ||||||||  |||||||| | || | ||| ||||||||||||||||||| || ||| ||||  ||| |||||| |||||||| ||||||||||    
18484166 aaccaaatgtcaagaggaatacatgtagcaagtcaagtgttattcatgcaacaaaccaaatgttaagaataatgcatgcagcaaaccaagtgttattcat 18484067  T
228 gcaatacaccatatgtcaagaggaatgcaagcaac 262  Q
      || | | ||  || |||||||||||||||||||    
18484066 aaaacaaatcaagtgccaagaggaatgcaagcaac 18484032  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 253
Target Start/End: Original strand, 35711690 - 35711825
Alignment:
117 tacatgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaa 216  Q
    |||||||||  |||||||||||||||| ||||| |||||||  || | |||||  ||||||| || | || ||||| ||||||| |||||| ||| ||||    
35711690 tacatgcaacaaaccaagtgtcaagatcaatacttgcaacaa-cctagtgttacccatgcaataacccaaatgtcacgaggaatgcatgcaacaagccaa 35711788  T
217 ttgttattcatgcaatacaccatatgtcaagaggaat 253  Q
    ||||||| ||| || |  |||| ||||||||||||||    
35711789 ttgttatccatccagttaaccaaatgtcaagaggaat 35711825  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 18483176 - 18483110
Alignment:
112 aggattacatgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaa 178  Q
    |||| |||||||||  ||||||||||||||||||||||||||| || | ||| |||||| |||||||    
18483176 aggaatacatgcaacaaaccaagtgtcaagataaatacatgcagcaagacaagtgttatccatgcaa 18483110  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 35711744 - 35711858
Alignment:
119 catgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaatt 218  Q
    |||||||| | |||| ||||| ||  ||| ||||||||| ||||| |||||| ||| ||   ||| || ||||||||||||||||| || ||| |||| |    
35711744 catgcaataacccaaatgtcacgaggaatgcatgcaacaagccaattgttatccatccagttaaccaaatgtcaagaggaatacatacaacaagccaaat 35711843  T
219 gttattcatgcaata 233  Q
    |||||||||||||||    
35711844 gttattcatgcaata 35711858  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 11880001 - 11879964
Alignment:
185 aagtgtcaagaggaatacatgcatcaaaccaattgtta 222  Q
    ||||||||||||||||||||||||||| |||| |||||    
11880001 aagtgtcaagaggaatacatgcatcaagccaagtgtta 11879964  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 18483169 - 18483108
Alignment:
172 catgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaattgttattcatgcaata 233  Q
    |||||||||||| |||||||||||  |||||||||| |||  ||| |||||| |||||||||    
18483169 catgcaacaaaccaagtgtcaagataaatacatgcagcaagacaagtgttatccatgcaata 18483108  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 31861114 - 31861182
Alignment:
165 tgttattcatgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaattgttattcatgcaata 233  Q
    ||||||||||| |  |||  |||||||||||||| |||||||| |||||||| ||||||||||||||||    
31861114 tgttattcatgtagtaaatcaagtgtcaagaggattacatgcaacaaaccaaatgttattcatgcaata 31861182  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 262
Target Start/End: Complemental strand, 28950668 - 28950537
Alignment:
130 ccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaattgttattcatgc 229  Q
    |||||||||||||| |||  |||||||| |  || | |||  |||||||||||  |||||||||||||| |||||||| | |||||| ||||| ||||||    
28950668 ccaagtgtcaagatgaatgaatgcaacaagttaagttttacccatgcaacaaatcaagtgtcaagaggagtacatgcaac-aaccaagtgttactcatgc 28950570  T
230 aatacaccatatgtcaagaggaatgcaagcaac 262  Q
    ||||   || |||||| || ||||||| |||||    
28950569 aataactcaaatgtcatgacgaatgcatgcaac 28950537  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 35153529 - 35153561
Alignment:
172 catgcaacaaactaagtgtcaagaggaatacat 204  Q
    |||||||||||| ||||||||||||||||||||    
35153529 catgcaacaaaccaagtgtcaagaggaatacat 35153561  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 8037643 - 8037748
Alignment:
117 tacatgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaa 216  Q
    |||||||||| ||| ||||||||||| |||||||||||||   |||||||||| ||||| || |||| || | ||| ||||||| |||||| ||| ||||    
8037643 tacatgcaataaactaagtgtcaagaaaaatacatgcaac-gaccaaatgttactcatgaaataaaccaaatctcatgaggaatgcatgcaacaacccaa 8037741  T
217 ttgttat 223  Q
     ||||||    
8037742 ctgttat 8037748  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 39290068 - 39290146
Alignment:
112 aggattacatgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagtgt 190  Q
    |||| |||||||||  | ||||||||||||| |||||||||||||| |  || |||||| ||||||| |||||||||||    
39290068 aggaatacatgcaacaagccaagtgtcaagagaaatacatgcaacaagttaagtgttatccatgcaataaactaagtgt 39290146  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 3343604 - 3343531
Alignment:
119 catgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagtgtca 192  Q
    |||||||| | |||||||||||||  |||||||||| || |||||||||||  ||||||| |||| ||||||||    
3343604 catgcaataagccaagtgtcaagaggaatacatgcagcaagccaaatgttacccatgcaataaaccaagtgtca 3343531  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 3343810 - 3343737
Alignment:
172 catgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaattgttattcatgcaatacaccatatgtca 245  Q
    |||||||||||| ||||||||||| ||||||||||| |||  ||| |||||  ||||||||| |||| ||||||    
3343810 catgcaacaaaccaagtgtcaagatgaatacatgcagcaagtcaagtgttacccatgcaataaaccaaatgtca 3343737  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 3343604 - 3343538
Alignment:
172 catgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaattgttattcatgcaatacacca 238  Q
    ||||||| || | ||||||||||||||||||||||| ||| |||| |||||  ||||||||| ||||    
3343604 catgcaataagccaagtgtcaagaggaatacatgcagcaagccaaatgttacccatgcaataaacca 3343538  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 43108066 - 43108132
Alignment:
172 catgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaattgttattcatgcaatacacca 238  Q
    |||||||||| | |||||| ||||||||||||| || ||| |||| ||||| |||||||||| ||||    
43108066 catgcaacaagccaagtgttaagaggaatacatacaacaagccaaatgttactcatgcaataaacca 43108132  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 3343817 - 3343737
Alignment:
112 aggattacatgcaatcaaccaagtgtcaagataaatacatgcaacatgccaaatgttattcatgcaacaaactaagtgtca 192  Q
    |||| |||||||||  |||||||||||||||| |||||||||| || | ||| |||||  ||||||| |||| || |||||    
3343817 aggaatacatgcaacaaaccaagtgtcaagatgaatacatgcagcaagtcaagtgttacccatgcaataaaccaaatgtca 3343737  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 43108243 - 43108327
Alignment:
149 catgcaacatgccaaatgttattcatgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaattgttattcatgcaata 233  Q
    |||||||||  |||| |||||| || |||  |||| | || ||||||||| |||||||| |||| ||| ||||||||||||||||    
43108243 catgcaacaacccaattgttatccacgcagtaaaccaggtatcaagaggattacatgcaacaaagcaaatgttattcatgcaata 43108327  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 12513100 - 12513055
Alignment:
172 catgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaat 217  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||    
12513100 catgcaacaatccaagtgtcaagaggaatacatgcagcaaaccaat 12513055  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 18960693 - 18960729
Alignment:
172 catgcaacaaactaagtgtcaagaggaatacatgcat 208  Q
    |||||||||| | ||||||||||||||||||||||||    
18960693 catgcaacaagccaagtgtcaagaggaatacatgcat 18960729  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 9321511 - 9321443
Alignment:
165 tgttattcatgcaacaaactaagtgtcaagaggaatacatgcatcaaaccaattgttattcatgcaata 233  Q
    |||||| ||||||||||||||| ||||||||||| || || || |||  ||| ||||||||||||||||    
9321511 tgttatccatgcaacaaactaaatgtcaagaggattatattcaacaaggcaaatgttattcatgcaata 9321443  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 189
Target Start/End: Original strand, 39898223 - 39898252
Alignment:
160 ccaaatgttattcatgcaacaaactaagtg 189  Q
    ||||||||||||||||||||||||||||||    
39898223 ccaaatgttattcatgcaacaaactaagtg 39898252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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