View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_high_98 (Length: 279)

Name: NF19103_high_98
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_high_98
NF19103_high_98
[»] scaffold0038 (5 HSPs)
scaffold0038 (80-193)||(47186-47299)
scaffold0038 (22-112)||(47509-47596)
scaffold0038 (112-174)||(40160-40222)
scaffold0038 (22-79)||(47694-47751)
scaffold0038 (114-176)||(29037-29098)
[»] chr6 (11 HSPs)
chr6 (80-193)||(28247024-28247137)
chr6 (98-231)||(28329216-28329348)
chr6 (98-231)||(28506852-28506984)
chr6 (40-130)||(28192078-28192165)
chr6 (22-112)||(28247347-28247434)
chr6 (112-174)||(28239998-28240060)
chr6 (22-79)||(28247532-28247589)
chr6 (114-176)||(28228539-28228600)
chr6 (39-74)||(28329341-28329376)
chr6 (39-74)||(28506977-28507012)
chr6 (135-196)||(28094809-28094870)
[»] scaffold0019 (1 HSPs)
scaffold0019 (96-177)||(54686-54767)


Alignment Details
Target: scaffold0038 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 193
Target Start/End: Complemental strand, 47299 - 47186
Alignment:
Q  80 atgataatgtctaacataataaataagcacacagaattaaaattacatatttacatta-tcagtgttgacaccgtggtcattgaattcatcattcacaat 178  Q
    |||||||| | |||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  47299 atgataatatgtaacataataaataagcacacagaattaaaattagatatttacattattttgtgttgacacggtggtcattg-attcatcattcacaat 47201  T
Q  179 atcatccaatgaatg 193  Q
    |||||||||||||||    
T  47200 atcatccaatgaatg 47186  T

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Target: scaffold0038; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 47509 - 47596
Alignment:
Q  22 caacagaacataactcaaagtggagagagcaatcatttgaagaacataaataataatgatgataatgtctaacataataaataagcacaca 112  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||   |||||||| | ||||||||||||||||||||||    
T  47509 caacagatcataactcaaagtggagagagaaatcatttgaagaacataaataata---atgataatatgtaacataataaataagcacaca 47596  T

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Target: scaffold0038; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 40222 - 40160
Alignment:
Q  112 agaattaaaattacatatttacattatcagtgttgacaccgtggtcattgaattcatcattca 174  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40222 agaattaaaattacatatttacattatcagtgttgacaccatggtcattgaattcatcattca 40160  T

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Target: scaffold0038; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 47694 - 47751
Alignment:
Q  22 caacagaacataactcaaagtggagagagcaatcatttgaagaacataaataataatg 79  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47694 caacagatcataactcaaagtggagagagcaatcatttaaagaacataaataataatg 47751  T

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Target: scaffold0038; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 29098 - 29037
Alignment:
Q  114 aattaaaattacatatttacattatcagtgttgacaccgtggtcattgaattcatcattcaca 176  Q
    ||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||||||||    
T  29098 aattaaaattacatatttacattatctctgttgaca-tgtggtcattgaattcatcattcaca 29037  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 193
Target Start/End: Complemental strand, 28247137 - 28247024
Alignment:
Q  80 atgataatgtctaacataataaataagcacacagaattaaaattacatatttacatta-tcagtgttgacaccgtggtcattgaattcatcattcacaat 178  Q
    |||||||| | |||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  28247137 atgataatatgtaacataataaataagcacacagaattaaaattagatatttacattattttgtgttgacacggtggtcattg-attcatcattcacaat 28247039  T
Q  179 atcatccaatgaatg 193  Q
    |||||||||||||||    
T  28247038 atcatccaatgaatg 28247024  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 28329348 - 28329216
Alignment:
Q  98 ataaataagcacacagaattaaaattacatatttacattatcagtgttgacaccgtggtcattgaattcatcattcacaatatcatccaatgaatgcata 197  Q
    ||||||||||||||||||||  |||||||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  28329348 ataaataagcacacagaattggaattacatatttacat-atctgtgtcgacacggtggtcattgaattcatcattcacaatatcatccaatgaatgcatt 28329250  T
Q  198 acttgtgttaaaagaaatgaaaatcgcacatgac 231  Q
      |   |||  |||||||||||||||||||||||    
T  28329249 gttgacgttggaagaaatgaaaatcgcacatgac 28329216  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 98 - 231
Target Start/End: Complemental strand, 28506984 - 28506852
Alignment:
Q  98 ataaataagcacacagaattaaaattacatatttacattatcagtgttgacaccgtggtcattgaattcatcattcacaatatcatccaatgaatgcata 197  Q
    ||||||||||||||||||||  |||||||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  28506984 ataaataagcacacagaattggaattacatatttacat-atctgtgtcgacacggtggtcattgaattcatcattcacaatatcatccaatgaatgcatt 28506886  T
Q  198 acttgtgttaaaagaaatgaaaatcgcacatgac 231  Q
      |   |||  |||||||||||||||||||||||    
T  28506885 gttgacgttggaagaaatgaaaatcgcacatgac 28506852  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 28192165 - 28192078
Alignment:
Q  40 agtggagagagcaatcatttgaagaacataaataataatgatgataatgtctaacataataaataagcacacagaattaaaattacatatt 130  Q
    |||||||||||||||| |||||||||||||||||||||||||   ||||| |||||||||||||||| ||||| |||||||||||||||||    
T  28192165 agtggagagagcaatcttttgaagaacataaataataatgat---aatgtttaacataataaataagtacacacaattaaaattacatatt 28192078  T

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Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 28247347 - 28247434
Alignment:
Q  22 caacagaacataactcaaagtggagagagcaatcatttgaagaacataaataataatgatgataatgtctaacataataaataagcacaca 112  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||   |||||||| | ||||||||||||||||||||||    
T  28247347 caacagatcataactcaaagtggagagagaaatcatttgaagaacataaataata---atgataatatgtaacataataaataagcacaca 28247434  T

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Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 28240060 - 28239998
Alignment:
Q  112 agaattaaaattacatatttacattatcagtgttgacaccgtggtcattgaattcatcattca 174  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28240060 agaattaaaattacatatttacattatcagtgttgacaccatggtcattgaattcatcattca 28239998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 28247532 - 28247589
Alignment:
Q  22 caacagaacataactcaaagtggagagagcaatcatttgaagaacataaataataatg 79  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28247532 caacagatcataactcaaagtggagagagcaatcatttaaagaacataaataataatg 28247589  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 28228600 - 28228539
Alignment:
Q  114 aattaaaattacatatttacattatcagtgttgacaccgtggtcattgaattcatcattcaca 176  Q
    ||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||||||||    
T  28228600 aattaaaattacatatttacattatctctgttgaca-tgtggtcattgaattcatcattcaca 28228539  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 28329376 - 28329341
Alignment:
Q  39 aagtggagagagcaatcatttgaagaacataaataa 74  Q
    ||||||||||||||||||||||||||||||||||||    
T  28329376 aagtggagagagcaatcatttgaagaacataaataa 28329341  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 28507012 - 28506977
Alignment:
Q  39 aagtggagagagcaatcatttgaagaacataaataa 74  Q
    ||||||||||||||||||||||||||||||||||||    
T  28507012 aagtggagagagcaatcatttgaagaacataaataa 28506977  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 28094809 - 28094870
Alignment:
Q  135 ttatcagtgttgacaccgtgg-tcattgaattcatcattcacaatatcatccaatgaatgcat 196  Q
    ||||| ||||||||||||| | ||||||||| || |||||||||||||||| |||||||||||    
T  28094809 ttatctgtgttgacaccgttgatcattgaat-caacattcacaatatcatcgaatgaatgcat 28094870  T

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Target: scaffold0019 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 54686 - 54767
Alignment:
Q  96 taataaataagcacacagaattaaaattacatatttacattatcagtgttgacaccgtggtcattgaattcatcattcacaa 177  Q
    ||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| |||||||||||||||||||    
T  54686 taataaataagcacacagaattaaaattacatatttataatatgagtgttgacaccgtggtcgttgaattcatcattcacaa 54767  T

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