View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_10 (Length: 527)

Name: NF19103_low_10
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_10
NF19103_low_10
[»] chr5 (5 HSPs)
chr5 (1-388)||(12551842-12552231)
chr5 (389-513)||(12552303-12552428)
chr5 (137-258)||(1281336-1281457)
chr5 (83-258)||(1319261-1319436)
chr5 (134-183)||(2590846-2590895)
[»] chr4 (3 HSPs)
chr4 (83-216)||(30007195-30007328)
chr4 (455-495)||(50200020-50200060)
chr4 (455-497)||(27808566-27808608)
[»] chr3 (1 HSPs)
chr3 (131-201)||(33695345-33695415)
[»] chr1 (1 HSPs)
chr1 (125-183)||(37962859-37962917)
[»] chr2 (1 HSPs)
chr2 (429-495)||(13344872-13344938)
[»] chr7 (1 HSPs)
chr7 (430-486)||(45675811-45675867)
[»] chr6 (1 HSPs)
chr6 (2-58)||(3910285-3910341)


Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 12551842 - 12552231
Alignment:
Q  1 gtcaccatgttgtgatgaaattggtgtaaagaaagggccatggacacaagaagaagatgagaagctgattgattatatcaacaaacatggccatggaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12551842 gtcaccatgttgtgatgaaattggtgtaaagaaagggccatggacacaagaagaagatgagaagctgattgattatatcaacaaacatggccatggaaat 12551941  T
Q  101 tggggaacactttcaaaacgtgctggtttgaataggtgtgggaagagttgtaggttaaggtggacaaattatttgaggcctgacatcaagagagggaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12551942 tggggaacactttcaaaacgtgctggtttgaataggtgtgggaagagttgtaggttaaggtggacaaattatttgaggcctgatatcaagagagggaaat 12552041  T
Q  201 tcacagatgaagaagaaagagttatcatcaaccttcattcagttcttggaaacaagtatatttcttaacttgttttttcttatgtagaaaatgatattga 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12552042 tcactgatgaagaagaaagagttatcatcaaccttcattcagttcttggaaacaagtatatttcttatcttgttttttcttatgtagaaaatgatattga 12552141  T
Q  301 aatcactctaaagatagcgacggaatttcacagacggaaaaaataatttcgtctctaattccatcactaagtgtt--agacgtcaatttt 388  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  12552142 aatcactctaaagatagcgacggaatttcagagacggaaaaaataatttcgtctctaattccatcactaagtgttagagacgtcaatttt 12552231  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 389 - 513
Target Start/End: Original strand, 12552303 - 12552428
Alignment:
Q  389 ttcgagagctataaataatgtgannnnnnn-atttgtcttgtaggtggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaatt 487  Q
    |||||||||||||||||||||||        ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12552303 ttcgagagctataaataatgtgattttttttatttgtcttgtagatggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaatt 12552402  T
Q  488 attggaacacaaacataaggaaaaag 513  Q
    ||||||||||||||||||||||||||    
T  12552403 attggaacacaaacataaggaaaaag 12552428  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 1281336 - 1281457
Alignment:
Q  137 tgtgggaagagttgtaggttaaggtggacaaattatttgaggcctgacatcaagagagggaaattcacagatgaagaagaaagagttatcatcaaccttc 236  Q
    ||||| ||||||||||||||||| |||||||||||||| || ||||| || || |||||||||||  | |||||||||||   | | ||||||||  | |    
T  1281336 tgtggaaagagttgtaggttaagatggacaaattatttaagtcctgatattaaaagagggaaattttctgatgaagaagaggaactcatcatcaatttac 1281435  T
Q  237 attcagttcttggaaacaagta 258  Q
    |||||||||||||||| |||||    
T  1281436 attcagttcttggaaataagta 1281457  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 258
Target Start/End: Complemental strand, 1319436 - 1319261
Alignment:
Q  83 aaacatggccatggaaattggggaacactttcaaaacgtgctggtttgaataggtgtgggaagagttgtaggttaaggtggacaaattatttgaggcctg 182  Q
    |||||||||||||||| |||| || | ||| |||| | ||| || |||||||| ||||| |||||||||||  | || ||||  |||||| | |||||||    
T  1319436 aaacatggccatggaagttggagagctcttccaaagcttgcaggattgaatagatgtggaaagagttgtagacttagatggaataattatctaaggcctg 1319337  T
Q  183 acatcaagagagggaaattcacagatgaagaagaaagagttatcatcaaccttcattcagttcttggaaacaagta 258  Q
    | || |  ||||| |||||| | |||||||||||||   | ||||||||  | ||||||||||||||||| |||||    
T  1319336 atattagaagaggaaaattctctgatgaagaagaaaatctcatcatcaatttacattcagttcttggaaataagta 1319261  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 2590846 - 2590895
Alignment:
Q  134 aggtgtgggaagagttgtaggttaaggtggacaaattatttgaggcctga 183  Q
    |||||||| |||||||||||||| || |||| ||||||||| ||||||||    
T  2590846 aggtgtggtaagagttgtaggttgagatggataaattatttaaggcctga 2590895  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 216
Target Start/End: Original strand, 30007195 - 30007328
Alignment:
Q  83 aaacatggccatggaaattggggaacactttcaaaacgtgctggtttgaataggtgtgggaagagttgtaggttaaggtggacaaattatttgaggcctg 182  Q
    |||||||||||||||| |||| || ||||| |||| |  || || ||||| || |||||||| ||||| ||  |||||||||| || ||||| || ||||    
T  30007195 aaacatggccatggaagttggagagcacttccaaagctagcaggattgaacagatgtgggaaaagttgcagactaaggtggactaactatttaagacctg 30007294  T
Q  183 acatcaagagagggaaattcacagatgaagaaga 216  Q
    | ||||| |||||  |||||||||||||||||||    
T  30007295 atatcaaaagaggacaattcacagatgaagaaga 30007328  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 495
Target Start/End: Complemental strand, 50200060 - 50200020
Alignment:
Q  455 taccaggacgaacagataacgagataaaaaattattggaac 495  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  50200060 taccaggacgtacagataatgagataaaaaattattggaac 50200020  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 497
Target Start/End: Original strand, 27808566 - 27808608
Alignment:
Q  455 taccaggacgaacagataacgagataaaaaattattggaacac 497  Q
    |||||||| |||||||||| |||||||| ||||||||||||||    
T  27808566 taccaggaagaacagataatgagataaagaattattggaacac 27808608  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 33695345 - 33695415
Alignment:
Q  131 aataggtgtgggaagagttgtaggttaaggtggacaaattatttgaggcctgacatcaagagagggaaatt 201  Q
    ||||| ||||| |||||||||||| |||||||||| |||||||| |||||||| || |||||||| |||||    
T  33695345 aatagatgtggaaagagttgtaggctaaggtggaccaattatttaaggcctgatattaagagaggaaaatt 33695415  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 37962859 - 37962917
Alignment:
Q  125 ggtttgaataggtgtgggaagagttgtaggttaaggtggacaaattatttgaggcctga 183  Q
    |||||| | ||||||||||||||||| |||||||| |||| |||||| |||||||||||    
T  37962859 ggtttgcaaaggtgtgggaagagttgcaggttaagatggataaattacttgaggcctga 37962917  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 495
Target Start/End: Original strand, 13344872 - 13344938
Alignment:
Q  429 taggtggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaattattggaac 495  Q
    ||||||||||  ||| ||| | ||| ||||||||||||||||||| |||||||| || |||||||||    
T  13344872 taggtggtcggtgatagcatcacatttaccaggacgaacagataatgagataaagaactattggaac 13344938  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 486
Target Start/End: Complemental strand, 45675867 - 45675811
Alignment:
Q  430 aggtggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaat 486  Q
    ||||||||| |||||||||||||  |||| ||| ||||||| || ||||||||||||    
T  45675867 aggtggtcgcagattgcagctcagttacctggaagaacagacaatgagataaaaaat 45675811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 3910285 - 3910341
Alignment:
Q  2 tcaccatgttgtgatgaaattggtgtaaagaaagggccatggacacaagaagaagat 58  Q
    ||||||||||||||  || ||||| |||||||||| |||||||| | ||||||||||    
T  3910285 tcaccatgttgtgacaaagttggtttaaagaaaggtccatggactccagaagaagat 3910341  T

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