View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_100 (Length: 275)
Name: NF19103_low_100
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_100 |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 8169410 - 8169669
Alignment:
| Q |
1 |
tggaagtcaagatggaagaagaaagattgtggatccaatagtgttaacaacttgttctcaagaatcattatcaattgcaatatctataacaaccaaatgt |
100 |
Q |
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| T |
8169410 |
tggaagtcaagatggaagaagaaagattgtggatccaatagtgttgacaacttgctctcaagaatcattatcaattgcaatatctataacaaccaaatgt |
8169509 |
T |
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| Q |
101 |
atatctcaagactcttcatctcgtccttcttttgaagatgttctatggaacttacaatatgcagctcaagttcaagccacatcagatgcagatcaaaaat |
200 |
Q |
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| T |
8169510 |
atatctcaagactcttcatctcgtccttcttttgaagatgttctatggaacttacaatatgcagctcaagttcaagccacatcagatgcagatcaaaaat |
8169609 |
T |
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| Q |
201 |
cagattaagatttaacatcataggtgcatagaaagaaatcggggatttattagtgaaaac |
260 |
Q |
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| T |
8169610 |
cagattaagatttaacatcataggtgcatagaaagaaatcggggatttattagtgaaaac |
8169669 |
T |
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Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 193
Target Start/End: Complemental strand, 10975436 - 10975248
Alignment:
| Q |
5 |
agtcaagatggaagaagaaagattgtggatccaatagtgttaacaacttgttctcaagaatcattatcaattgcaatatctataacaaccaaatgtatat |
104 |
Q |
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| T |
10975436 |
agtcatgatggtagaaaaagaattgtagatccagtagtgttgacaacttgctgtcaagagtctttaacaattgcaatatccattacaaccaaatgcatat |
10975337 |
T |
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| Q |
105 |
ctcaagactcttcatctcgtccttcttttgaagatgttctatggaacttacaatatgcagctcaagttcaagccacatcagatgcagat |
193 |
Q |
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| T |
10975336 |
caccacaatcctcatctcgtccttcttttgaagatgttctctggaatttacaatatgcagctcaagtccaagcctcagcagatgcagat |
10975248 |
T |
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