View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_101 (Length: 275)
Name: NF19103_low_101
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_101 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 106 - 256
Target Start/End: Complemental strand, 34833409 - 34833258
Alignment:
| Q |
106 |
cacaaataaaccctcttggtgaaatacggtgatgaagttggagaatctagatcccacaagcaactagacactagagaagtttgagacactttaggtacct |
205 |
Q |
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| T |
34833409 |
cacaaataaaccctcttggtgaaatacggtgatgaagttggagaatctagatcccacaagcaactagacactagagaagtttgagacactttaggtacct |
34833310 |
T |
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| Q |
206 |
gaacggaccaaataaacccca-aagcatctagaaaattccaaatcagcttac |
256 |
Q |
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| T |
34833309 |
gaacggaccaaatagaccccacaagcatctagaaaattccaaatcagcttac |
34833258 |
T |
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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 8280434 - 8280370
Alignment:
| Q |
20 |
ctagtcaccctgattaagtccggactcagctatcaatatggtggagaagtgttgggaccatattg |
84 |
Q |
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| T |
8280434 |
ctagtcaccctgattaagtccggactcagctatcaatatggtggagaagtgttgggaccatattg |
8280370 |
T |
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