View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_106 (Length: 272)

Name: NF19103_low_106
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_106
NF19103_low_106
[»] chr2 (7 HSPs)
chr2 (10-255)||(410444-410689)
chr2 (44-255)||(821334-821545)
chr2 (13-251)||(1399985-1400220)
chr2 (13-251)||(1403703-1403941)
chr2 (56-251)||(973649-973844)
chr2 (56-255)||(965074-965279)
chr2 (44-155)||(957815-957926)
[»] chr3 (1 HSPs)
chr3 (43-255)||(45810117-45810329)
[»] chr7 (2 HSPs)
chr7 (44-254)||(12105508-12105718)
chr7 (51-255)||(28449416-28449617)
[»] chr6 (1 HSPs)
chr6 (49-251)||(10116388-10116590)
[»] chr1 (1 HSPs)
chr1 (114-255)||(48675091-48675232)
[»] chr5 (1 HSPs)
chr5 (49-166)||(36199331-36199445)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 410444 - 410689
Alignment:
Q  10 aagaaaattgggtggattccgaatttgtttcaccttgcttttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattg 109  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  410444 aagaaaattgggtggattccgaatttgttccaccttgcttttcgttaaaccttacaacttgcactattcgggacttcgcatttgcaggcctacaacattg 410543  T
Q  110 tcacattatgttagcaaaatttattctaaagaatgcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactatta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  410544 tcacattatgttagcaaaatttattctaaagaatgcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactatta 410643  T
Q  210 tcctcatgtccaagggcttctacaacatgtcaactttcaatttatt 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  410644 tcctcatgtccaagggcttctacaacatgtcaactttcaatttatt 410689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 44 - 255
Target Start/End: Original strand, 821334 - 821545
Alignment:
Q  44 ttgcttttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaat 143  Q
    |||| |||||||||||||||||||||||| ||| |||||||| ||| ||||||||| ||||  |  ||||||||||||||||| ||||||||| ||||||    
T  821334 ttgcgtttcattaaaccttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttattctgaagaat 821433  T
Q  144 gcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctcatgtccaagggcttctacaacatgtcaac 243  Q
    || |||||||||  ||||||||| |||| | ||||||| ||||| ||| || ||||||| | ||||||  |||| |||||||||||| ||||||||||||    
T  821434 gcgagagttttagaaactatgacaatctggagcaacaataaacaatctgaaatagaaagtcgattatctccatgcccaagggcttctgcaacatgtcaac 821533  T
Q  244 tttcaatttatt 255  Q
    ||||| ||||||    
T  821534 tttcattttatt 821545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 1399985 - 1400220
Alignment:
Q  13 aaaattgggtggattccgaatttgtttcaccttgcttttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtca 112  Q
    |||||||||||||| | |||| |||| ||  |||  |||||||||||||||||||||||| ||| |||||||| |    || ||||| ||||| |  ||     
T  1399985 aaaattgggtggatcctgaatctgttccaagttgtctttcattaaaccttacaacttgcaatatgcgggactttga---tgaaggccaacaacgtaatcg 1400081  T
Q  113 cattatgttagcaaaatttattctaaagaatgcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcc 212  Q
    ||||||||||||||  ||||||||  |||||||||||||||||  ||||||| | |||| |||| ||| || |  | | |||| ||||||| |||||| |    
T  1400082 cattatgttagcaaggtttattctgcagaatgcaagagttttagaaactatgccaatctggtgctacatgagatggcccaaagcagaaagagtattattc 1400181  T
Q  213 tcatgtccaagggcttctacaacatgtcaactttcaatt 251  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  1400182 tcatgtccaagggcttctgtaacatgtcaactttcaatt 1400220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 1403703 - 1403941
Alignment:
Q  13 aaaattgggtggattccgaatttgtttcaccttgcttttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtca 112  Q
    |||||||||||||| | ||||  ||| ||  |||| |||||||||||||||||||||||| ||| |||||||| |   ||| || || ||| | |  ||     
T  1403703 aaaattgggtggatcctgaatcagttccaagttgcctttcattaaaccttacaacttgcaatatgcgggactttgttgttgtagaccaacaccgtaatcg 1403802  T
Q  113 cattatgttagcaaaatttattctaaagaatgcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcc 212  Q
    ||||||||||||||  ||||||||  | |||||||||||||||  ||||||| | |||| |||| |||||| |  | |||||| ||||||| ||||||||    
T  1403803 cattatgttagcaaggtttattctggataatgcaagagttttagaaactatgtcaatctggtgctacaagagatggcctaaagcagaaagagtattatcc 1403902  T
Q  213 tcatgtccaagggcttctacaacatgtcaactttcaatt 251  Q
    |||||||||| ||| ||| |||||||||||||| |||||    
T  1403903 tcatgtccaaaggcatctgcaacatgtcaacttacaatt 1403941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 56 - 251
Target Start/End: Complemental strand, 973844 - 973649
Alignment:
Q  56 aaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaagagtttta 155  Q
    ||||||||||||||||| |||  ||||||| |||| |||||||| ||||| |  ||||||||||||||||| |||||||||  |||| ||||||||||||    
T  973844 aaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgttagcaagatttattctggagaacgcaagagtttta 973745  T
Q  156 cgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctcatgtccaagggcttctacaacatgtcaactttcaatt 251  Q
    | ||||||||  |||| | ||||||  ||||  ||| |  ||||||| | ||||||  |||| |||| ||||||| |||||||||| |||||||||    
T  973744 caaactatgaaaatctggagcaacagtaaacgatctgatatagaaagtcaattatctccatgcccaaaggcttctgcaacatgtcagctttcaatt 973649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 56 - 255
Target Start/End: Complemental strand, 965279 - 965074
Alignment:
Q  56 aaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaagagtttta 155  Q
    ||||||||||||||||| |||  ||||||| |||| |||||||| ||||| |  |||||||||| |||||| |||||||||  |||||||||||||||||    
T  965279 aaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagtttta 965180  T
Q  156 cgaactatgactatcttgtgcaacaagaaacagtctaaagt------agaaagactattatcctcatgtccaagggcttctacaacatgtcaactttcaa 249  Q
      ||||||| | || | |||| ||| ||||  |||||||||      ||||||| ||||||| |||||||  ||||||||| || |||||||||| ||||    
T  965179 gaaactatgtcaatgtggtgctacacgaaagggtctaaagtagaattagaaagagtattatcatcatgtcatagggcttcttcagcatgtcaactctcaa 965080  T
Q  250 tttatt 255  Q
    | ||||    
T  965079 tgtatt 965074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 957926 - 957815
Alignment:
Q  44 ttgcttttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaat 143  Q
    |||| |||||||||||||||||||||||| ||| |||||||| ||| ||||||||| ||||  |  |||  |||| ||||||  ||||||||| ||||||    
T  957926 ttgcctttcattaaaccttacaacttgcactatgcgggactttgcacttgcaggccaacaaagtaatcatcttattttagcattatttattctgaagaat 957827  T
Q  144 gcaagagtttta 155  Q
    || |||||||||    
T  957826 gcgagagtttta 957815  T

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Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 43 - 255
Target Start/End: Complemental strand, 45810329 - 45810117
Alignment:
Q  43 cttgcttttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaa 142  Q
    ||||| ||||||||||||| || ||||||| ||| |||||||| |||||||||||| |||||| |  |||  ||||||||||||  |||||||| |||||    
T  45810329 cttgcctttcattaaacctcacgacttgcactatgcgggactttgcatttgcaggcttacaacgtaatcatgttatgttagcaaggtttattctgaagaa 45810230  T
Q  143 tgcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctcatgtccaagggcttctacaacatgtcaa 242  Q
    ||||| |||||||  ||||||||| || | ||||| ||  |||| ||||||| |||||| ||||||||| |||||||||||||||||| ||| |||||||    
T  45810229 tgcaaaagttttagaaactatgacaatttggtgcagcagaaaacggtctaaaatagaaaaactattatcttcatgtccaagggcttctgcaaaatgtcaa 45810130  T
Q  243 ctttcaatttatt 255  Q
    |||||||||||||    
T  45810129 ctttcaatttatt 45810117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 44 - 254
Target Start/End: Original strand, 12105508 - 12105718
Alignment:
Q  44 ttgcttttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaat 143  Q
    |||| |||||| |||||||| |||||| |  || || ||||| ||| ||| |||||||||   || ||||||||||||||||||||||||||| ||||||    
T  12105508 ttgcctttcatcaaaccttagaacttgtacgatccgtgactttgcaattggaggcctacagagttatcacattatgttagcaaaatttattctgaagaat 12105607  T
Q  144 gcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctcatgtccaagggcttctacaacatgtcaac 243  Q
     ||| |||||||  || |||| | |||| ||||  |  |||||||||| || ||||||||| |||| |||| ||| |||| |||||| ||||||||||||    
T  12105608 tcaacagttttagaaaatatgtcaatctggtgcttcgggaaacagtctgaaatagaaagacgattaacctcgtgttcaagagcttctgcaacatgtcaac 12105707  T
Q  244 tttcaatttat 254  Q
    |||||||||||    
T  12105708 tttcaatttat 12105718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 51 - 255
Target Start/End: Complemental strand, 28449617 - 28449416
Alignment:
Q  51 tcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaagag 150  Q
    |||||| | ||||||||||||| |||||||||||| ||||||| || ||||||| |   | |||||||| |||||| || |||||| || ||||||||||    
T  28449617 tcattacatcttacaacttgcactattcgggactttgcatttgtagacctacaaaa---tgacattatgctagcaagatatattcttaataatgcaagag 28449521  T
Q  151 ttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctcatgtccaagggcttctacaacatgtcaactttcaat 250  Q
    |||||| ||| ||||  || | | |  | ||  ||||  || || |||||||   ||||||||||||||||||||| || ||||| |||||||||||| |    
T  28449520 ttttacaaaccatgatgatatggagtgataaagaacaacctcaaatagaaagggaattatcctcatgtccaagggcatccacaacttgtcaactttcagt 28449421  T
Q  251 ttatt 255  Q
    |||||    
T  28449420 ttatt 28449416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 251
Target Start/End: Complemental strand, 10116590 - 10116388
Alignment:
Q  49 tttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaag 148  Q
    |||||| ||||||||||||||| | ||| ||||| || | |||| ||||||||||   || |||||||||| |||| |  ||||||||  ||||||| ||    
T  10116590 tttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgag 10116491  T
Q  149 agttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctcatgtccaagggcttctacaacatgtcaactttca 248  Q
    |||||||  ||||||| | |||| |||   |  ||||| ||||||| |||||||| | |||||||||||||||||||||||| |||||||| ||||||||    
T  10116490 agttttagaaactatgtcaatctggtgttgcgggaaacggtctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca 10116391  T
Q  249 att 251  Q
    |||    
T  10116390 att 10116388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 255
Target Start/End: Complemental strand, 48675232 - 48675091
Alignment:
Q  114 attatgttagcaaaatttattctaaagaatgcaagagttttacgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcct 213  Q
    ||||||||||||| || ||||||||| ||||||| |||||||| ||||||||| || | | || ||||| | ||  || || |||||||   ||||||||    
T  48675232 attatgttagcaagatatattctaaataatgcaaaagttttacaaactatgacaatatggagcgacaaggaccaacctcaaatagaaagggaattatcct 48675133  T
Q  214 catgtccaagggcttctacaacatgtcaactttcaatttatt 255  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||    
T  48675132 catgtccaagggcctctgcaacatgtcaactttcagtttatt 48675091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 166
Target Start/End: Original strand, 36199331 - 36199445
Alignment:
Q  49 tttcattaaaccttacaacttgcattattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaag 148  Q
    |||||||| | |||| |||||||| ||||||||||||||| |||| || |||||||||     || |||||||||||| || ||||||||| ||||||||    
T  36199331 tttcattatatcttagaacttgcactattcgggacttcgcttttgtagacctacaacacg---accttatgttagcaagatatattctaaataatgcaag 36199427  T
Q  149 agttttacgaactatgac 166  Q
    |||||||| |||||||||    
T  36199428 agttttacaaactatgac 36199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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