View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_109 (Length: 270)

Name: NF19103_low_109
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_109
NF19103_low_109
[»] chr4 (36 HSPs)
chr4 (116-251)||(33462316-33462449)
chr4 (116-251)||(8694714-8694851)
chr4 (116-251)||(31274515-31274652)
chr4 (116-251)||(33467961-33468097)
chr4 (116-251)||(37263521-37263658)
chr4 (116-251)||(12822868-12823005)
chr4 (116-251)||(16422047-16422183)
chr4 (116-251)||(31728324-31728460)
chr4 (116-250)||(5270381-5270516)
chr4 (118-251)||(51698930-51699065)
chr4 (116-251)||(37258823-37258958)
chr4 (116-242)||(19907301-19907426)
chr4 (116-242)||(13064771-13064894)
chr4 (116-251)||(2820793-2820929)
chr4 (155-242)||(8029332-8029419)
chr4 (133-251)||(55252645-55252766)
chr4 (116-251)||(5925762-5925890)
chr4 (116-216)||(13060504-13060605)
chr4 (116-233)||(29349165-29349280)
chr4 (155-222)||(12875436-12875503)
chr4 (155-242)||(19102978-19103065)
chr4 (116-196)||(6943820-6943900)
chr4 (155-251)||(19107579-19107678)
chr4 (165-233)||(32220571-32220639)
chr4 (155-251)||(48275836-48275931)
chr4 (155-251)||(27183236-27183324)
chr4 (164-214)||(8028161-8028211)
chr4 (116-253)||(23094108-23094245)
chr4 (166-251)||(32081176-32081260)
chr4 (155-212)||(12878943-12879000)
chr4 (1-53)||(33462211-33462264)
chr4 (155-243)||(40408958-40409043)
chr4 (173-242)||(31766884-31766953)
chr4 (175-248)||(28601624-28601697)
chr4 (155-242)||(47245142-47245227)
chr4 (187-233)||(29985010-29985056)
[»] chr3 (22 HSPs)
chr3 (116-251)||(20520962-20521099)
chr3 (116-243)||(7570173-7570300)
chr3 (116-250)||(20175395-20175528)
chr3 (116-251)||(757322-757459)
chr3 (116-251)||(18473007-18473144)
chr3 (116-251)||(23660447-23660584)
chr3 (116-251)||(23665079-23665216)
chr3 (116-233)||(46965033-46965150)
chr3 (133-251)||(55326778-55326897)
chr3 (116-251)||(14437651-14437785)
chr3 (116-217)||(18468248-18468350)
chr3 (155-251)||(55432228-55432323)
chr3 (116-251)||(3426074-3426208)
chr3 (116-251)||(27709932-27710066)
chr3 (133-234)||(12964857-12964960)
chr3 (116-242)||(12970766-12970892)
chr3 (155-251)||(3656254-3656352)
chr3 (136-199)||(32473122-32473185)
chr3 (155-233)||(38891138-38891215)
chr3 (155-242)||(29351239-29351327)
chr3 (165-242)||(7860720-7860797)
chr3 (156-233)||(2206829-2206906)
[»] chr2 (24 HSPs)
chr2 (116-251)||(12797930-12798068)
chr2 (116-251)||(30651915-30652052)
chr2 (116-251)||(18345417-18345554)
chr2 (116-251)||(19891465-19891600)
chr2 (116-233)||(1933967-1934084)
chr2 (117-233)||(20101609-20101725)
chr2 (116-243)||(17967922-17968048)
chr2 (116-251)||(17974309-17974445)
chr2 (116-251)||(25496342-25496479)
chr2 (116-251)||(29678679-29678816)
chr2 (116-251)||(9179684-9179823)
chr2 (116-251)||(9184375-9184514)
chr2 (116-251)||(12361250-12361383)
chr2 (117-251)||(19896951-19897085)
chr2 (155-251)||(42925673-42925769)
chr2 (116-251)||(24536974-24537118)
chr2 (116-251)||(25477247-25477384)
chr2 (155-233)||(31329083-31329161)
chr2 (155-233)||(31335804-31335882)
chr2 (155-233)||(28604107-28604184)
chr2 (116-174)||(40846479-40846537)
chr2 (148-251)||(15446273-15446377)
chr2 (158-243)||(32080388-32080474)
chr2 (198-251)||(40846622-40846677)
[»] chr5 (26 HSPs)
chr5 (116-251)||(37247757-37247894)
chr5 (116-251)||(6154390-6154527)
chr5 (116-251)||(26668279-26668416)
chr5 (116-251)||(26939876-26940013)
chr5 (116-251)||(7452756-7452893)
chr5 (116-242)||(39519397-39519523)
chr5 (116-251)||(29166931-29167068)
chr5 (116-251)||(36424639-36424776)
chr5 (128-242)||(23757134-23757248)
chr5 (128-242)||(23822590-23822704)
chr5 (116-242)||(37646013-37646139)
chr5 (116-222)||(39524056-39524162)
chr5 (116-251)||(20180113-20180248)
chr5 (116-251)||(10759320-10759456)
chr5 (116-206)||(40150243-40150333)
chr5 (155-251)||(35678895-35678993)
chr5 (116-251)||(36430519-36430654)
chr5 (155-242)||(37536934-37537020)
chr5 (116-194)||(12104105-12104183)
chr5 (169-251)||(6511614-6511698)
chr5 (155-242)||(4872894-4872981)
chr5 (157-242)||(17162869-17162955)
chr5 (155-242)||(9725770-9725858)
chr5 (179-251)||(17159378-17159452)
chr5 (155-215)||(22832503-22832563)
chr5 (155-242)||(23689083-23689170)
[»] chr1 (14 HSPs)
chr1 (116-251)||(10136326-10136463)
chr1 (116-251)||(25844757-25844894)
chr1 (159-251)||(51040522-51040616)
chr1 (155-233)||(38622210-38622288)
chr1 (155-251)||(16036607-16036705)
chr1 (117-251)||(16648591-16648725)
chr1 (155-251)||(23191836-23191932)
chr1 (155-251)||(40166941-40167039)
chr1 (116-202)||(26926687-26926773)
chr1 (116-204)||(5100133-5100220)
chr1 (116-212)||(8138634-8138727)
chr1 (154-233)||(19797990-19798070)
chr1 (167-233)||(46697336-46697400)
chr1 (155-233)||(39586079-39586156)
[»] chr8 (20 HSPs)
chr8 (116-251)||(40124852-40124989)
chr8 (116-242)||(1808463-1808588)
chr8 (124-251)||(38181248-38181377)
chr8 (116-233)||(1909905-1910022)
chr8 (164-251)||(17021257-17021345)
chr8 (164-251)||(17551694-17551782)
chr8 (116-251)||(44924879-44925016)
chr8 (129-251)||(26780105-26780228)
chr8 (128-251)||(2966586-2966711)
chr8 (118-242)||(15950528-15950656)
chr8 (144-251)||(7002646-7002755)
chr8 (116-251)||(28559075-28559211)
chr8 (133-243)||(18875360-18875470)
chr8 (118-251)||(28564258-28564390)
chr8 (175-217)||(17953164-17953206)
chr8 (116-210)||(23547569-23547663)
chr8 (177-230)||(17798071-17798124)
chr8 (116-216)||(17027130-17027224)
chr8 (116-216)||(17557622-17557716)
chr8 (189-251)||(33417531-33417595)
[»] chr7 (21 HSPs)
chr7 (116-251)||(4931224-4931361)
chr7 (116-233)||(12802304-12802420)
chr7 (116-248)||(21672209-21672342)
chr7 (119-248)||(2595774-2595905)
chr7 (116-251)||(3046575-3046711)
chr7 (117-251)||(42625538-42625673)
chr7 (133-243)||(44508271-44508381)
chr7 (133-242)||(3880983-3881092)
chr7 (155-242)||(23151683-23151770)
chr7 (116-243)||(10392045-10392174)
chr7 (116-251)||(12257023-12257159)
chr7 (155-214)||(23247556-23247615)
chr7 (116-251)||(26342208-26342343)
chr7 (121-231)||(8269331-8269436)
chr7 (155-233)||(30259283-30259361)
chr7 (165-251)||(4580466-4580554)
chr7 (155-251)||(26286153-26286253)
chr7 (175-251)||(13313331-13313409)
chr7 (158-203)||(10387346-10387391)
chr7 (158-250)||(15973725-15973819)
chr7 (202-251)||(12181796-12181847)
[»] scaffold0240 (1 HSPs)
scaffold0240 (116-247)||(4977-5107)
[»] chr6 (23 HSPs)
chr6 (116-251)||(16835119-16835257)
chr6 (120-251)||(17963520-17963653)
chr6 (134-251)||(6406836-6406955)
chr6 (134-233)||(17600398-17600497)
chr6 (116-242)||(11569651-11569775)
chr6 (120-209)||(22694347-22694436)
chr6 (116-242)||(11533660-11533785)
chr6 (116-242)||(11559170-11559295)
chr6 (117-251)||(20747256-20747392)
chr6 (117-233)||(11428978-11429094)
chr6 (133-253)||(12405335-12405457)
chr6 (155-233)||(12797779-12797857)
chr6 (120-234)||(33686606-33686719)
chr6 (117-251)||(19994344-19994479)
chr6 (154-251)||(12689970-12690068)
chr6 (116-251)||(2699072-2699210)
chr6 (116-251)||(11612862-11612998)
chr6 (155-242)||(22610523-22610608)
chr6 (117-186)||(5857028-5857096)
chr6 (155-242)||(19674785-19674871)
chr6 (172-233)||(25313487-25313548)
chr6 (172-233)||(26200981-26201042)
chr6 (120-187)||(29891923-29891991)
[»] scaffold0002 (2 HSPs)
scaffold0002 (116-251)||(5065-5202)
scaffold0002 (116-242)||(442898-443023)
[»] scaffold0054 (2 HSPs)
scaffold0054 (118-251)||(30178-30313)
scaffold0054 (155-251)||(26442-26540)
[»] scaffold0352 (1 HSPs)
scaffold0352 (116-251)||(8110-8247)
[»] scaffold0057 (1 HSPs)
scaffold0057 (118-217)||(36158-36257)
[»] scaffold0690 (1 HSPs)
scaffold0690 (116-214)||(6272-6371)
[»] scaffold0011 (1 HSPs)
scaffold0011 (155-250)||(64892-64988)
[»] scaffold0595 (1 HSPs)
scaffold0595 (155-243)||(3796-3884)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 33462316 - 33462449
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  33462316 gttggaacattagtgtaatgttcgaagaaaaattgaataattaaacaccaaataattata-tttgatctaatgttgtgtgaattgaaaaaatagagtgtg 33462414  T
Q  216 ggagtcccaaataaaataagacacacattagtagtg 251  Q
    |  ||||| |||||||||||||||||||||||||||    
T  33462415 gaggtccc-aataaaataagacacacattagtagtg 33462449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 8694851 - 8694714
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8694851 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 8694752  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || ||||||||||||||||    
T  8694751 ggggtcccacataaaatagaacacacacattagtagtg 8694714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 31274652 - 31274515
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31274652 gttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 31274553  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||  |||||||  || ||||||||||||||||    
T  31274552 ggggtcccgcataaaatagaacacacacattagtagtg 31274515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 33467961 - 33468097
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  33467961 gttggaacattagtgtgatgttggaagaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtaaattgaaaaaatagagtgta 33468060  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    ||  ||||| |||||||  || ||||||||||||||||    
T  33468061 gg-ttcccacataaaatagaacacacacattagtagtg 33468097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 37263521 - 37263658
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| ||||| || |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37263521 gttggaacattgatgtgatgtttgatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 37263620  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||  |||||||  || ||||||||||||||||    
T  37263621 ggggtcccgcataaaatagaacacacacattagtagtg 37263658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 12822868 - 12823005
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||||||| ||||||||| | |||||| |  || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12822868 gttggaacattagtgtgatgttggaaaataaattggaagatcaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 12822967  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  ||  |||||||||||||||    
T  12822968 ggggtcccacataaaatagaactcacacattagtagtg 12823005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 16422183 - 16422047
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    ||||||||||| |||| ||||||||| | |||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16422183 gttggaacatt-gtgtgatgttggaaaataaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 16422085  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || |||| |||||||||||    
T  16422084 ggggtcccacataaaatagaacacacgcattagtagtg 16422047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 31728324 - 31728460
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31728324 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattataatttgatctaatgttgtgtgaattgaaaaaatagagtgtg 31728423  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || ||||||||||||||||    
T  31728424 gg-gtcccacataaaatagaacacacacattagtagtg 31728460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 116 - 250
Target Start/End: Original strand, 5270381 - 5270516
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5270381 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagaatgtg 5270480  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagt 250  Q
    || |||||| |||||||  || |||||||||||||||    
T  5270481 gg-gtcccacataaaatagaacacacacattagtagt 5270516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 118 - 251
Target Start/End: Complemental strand, 51699065 - 51698930
Alignment:
Q  118 tggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggg 217  Q
    |||||||||||| | ||||||||| | ||||||||  |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  51699065 tggaacattagtttgatgttggaaaataaattgaaagattaaacaccaaataattatactttgaactaatgttgcgtgaattgaaaaaatagagtgtggg 51698966  T
Q  218 agtcccaaataaaat--aagacacacattagtagtg 251  Q
     |||||| |||||||  || ||||||||||||||||    
T  51698965 ggtcccacataaaatagaacacacacattagtagtg 51698930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 37258823 - 37258958
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| |||||||||||  |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  37258823 gttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaatta--ctttgatctaatgttgtgtgaattgaaaaaatagagtgtg 37258920  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||  |||||||  || ||||||||||||||||    
T  37258921 ggggtcccgcataaaatagaacacacacattagtagtg 37258958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 19907426 - 19907301
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    ||||||||||| |||| ||||||||||||||||||||  ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||    
T  19907426 gttggaacattggtgtgatgttggaagaaaaattgaaagattaaacaccaagtaattatattttgatctagtgttgtgtgaattgaaaaaataaagtgtg 19907327  T
Q  216 ggagtcccaaataaaataagacacaca 242  Q
    || ||| || ||||||||  |||||||    
T  19907326 gg-gtctcacataaaatagaacacaca 19907301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 13064771 - 13064894
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    ||||||||||| |||| |||||||||||||||||| | || |||| |||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  13064771 gttggaacattggtgtgatgttggaagaaaaattggaaaaataaataccaagtaattatactttgatctaatgtt---tgaattgaaaaaatagagtgtg 13064867  T
Q  216 ggagtcccaaataaaataagacacaca 242  Q
    || |||||| ||||||||  |||||||    
T  13064868 ggggtcccacataaaatagaacacaca 13064894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 2820929 - 2820793
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    ||||||||||| |||| | |||||||| ||||||| |  ||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||    
T  2820929 gttggaacattggtgtgaagttggaaggaaaattggaagattaaacaccaagtaattata-tttgatctagtgttgtgtgaattgaaaaattagagtgtg 2820831  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || ||||||||||||||||    
T  2820830 ggggtcccacataaaatagaacacacacattagtagtg 2820793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 8029332 - 8029419
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacaca 242  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| |||||| ||||||||  |||||||    
T  8029332 attaaacaccaagtaattaaactttgatctagtattgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacaca 8029419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 133 - 251
Target Start/End: Complemental strand, 55252766 - 55252645
Alignment:
Q  133 atgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaa-aaaatagagtgtgggagtcccaaataaaa 231  Q
    |||||||| ||||||||| |  | |||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||  |||||| ||||||    
T  55252766 atgttggatgaaaaattggaagactaaacatcaagtaattatactttgatttaatgttgtgtgaattgaaaaaaatagagtgtggtggtcccacataaaa 55252667  T
Q  232 t--aagacacacattagtagtg 251  Q
    |  || ||||||||||||||||    
T  55252666 tagaacacacacattagtagtg 55252645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 5925762 - 5925890
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  |||||| ||||||||||||||||||||| |||||||||||||||||||||||       ||    
T  5925762 gttggaacattgatgtgatgttggatgaaaaattggaagattaaataccaagtaattatactttgatataatgttgtgtgaattgaaaaaa-------tg 5925854  T
Q  216 ggagtcccaaataaaataagacacacattagtagtg 251  Q
    || |||||| ||||||||  ||||||||||||||||    
T  5925855 ggggtcccacataaaatagaacacacattagtagtg 5925890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 13060605 - 13060504
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaa-aaaatagagtgt 214  Q
    |||||||||||||||| |||||| || | |||||| |  ||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  13060605 gttggaacattagtgtgatgttgaaaaataaattggaagattaaaccccaagtaattatactttgatctaatattgtgtgaattgaaaaaaatagagtgt 13060506  T
Q  215 gg 216  Q
    ||    
T  13060505 gg 13060504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 29349165 - 29349280
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    ||||||||||| |||| |||||||||| |||| || |  ||||||||| |||||||||||||||||| || ||||| |||||||||||||||||||||||    
T  29349165 gttggaacattggtgtgatgttggaaggaaaactggaagattaaacactaagtaattatactttgat-tagtgttgagtgaattgaaaaaatagagtgtg 29349263  T
Q  216 ggagtcccaaataaaata 233  Q
     | |||||| ||||||||    
T  29349264 ag-gtcccacataaaata 29349280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 12875503 - 12875436
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcc 222  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  12875503 attaaacaccaagtaattagactttcatctagtgttgtgtgaattgaaaaaatagagtgtgggggtcc 12875436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 19103065 - 19102978
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacaca 242  Q
    ||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||||||  |||||| ||||||||  |||||||    
T  19103065 attaaactccaagttattaaactttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacataaaatagaacacaca 19102978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 6943900 - 6943820
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtga 196  Q
    |||| ||||||||||| |||||||||||||||||| |  |||||||| ||||||||||||||||||| || ||||||||||    
T  6943900 gttgcaacattagtgtgatgttggaagaaaaattggaagattaaacatcaagtaattatactttgatttactgttgtgtga 6943820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 19107678 - 19107579
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaa-tgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |||||||||||||| |||| |||||||||||| | |||||||||||||||| |||||||||||  |||||| |||||||  || ||||||||||||||||    
T  19107678 attaaacaccaagttattaaactttgatctaagtattgtgtgaattgaaaatatagagtgtggaggtcccacataaaatagaacacacacattagtagtg 19107579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 32220571 - 32220639
Alignment:
Q  165 aagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaata 233  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||    
T  32220571 aagtaattatattttgatctaatattgtgtgaattaaaaaaatagagtgtgggggtcccacataaaata 32220639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 48275836 - 48275931
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacacattagtagtg 251  Q
    |||||||| ||||| |||| ||||||||||  ||||||||||||||||||||||||||||||| || ||| ||||||||  ||||||| ||| ||||    
T  48275836 attaaacatcaagttattaaactttgatcttgtgttgtgtgaattgaaaaaatagagtgtgggggt-ccatataaaatataacacacactagcagtg 48275931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 27183324 - 27183236
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacacattagtagtg 251  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||        |||| |||||| ||||||||  ||||||||||||||||    
T  27183324 attaaataccaagtaattatactttgatataatgttgtgtgaattgaaaaa--------tgggggtcccacataaaatagaacacacattagtagtg 27183236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 8028161 - 8028211
Alignment:
Q  164 caagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 214  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  8028161 caagtaattaaactttgatcgaatgttgtgtgaattgaaaaaatagagtgt 8028211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 253
Target Start/End: Complemental strand, 23094245 - 23094108
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| | ||| ||| ||||||||||  ||||||||||||| ||||| | ||||| |||||||  | |||||||||||||||||| |||    
T  23094245 gttggaacattgatgtgaagttagaaaaaaaattgaaagattaaacaccaaggaattagaatttgagctaatgtgatatgaattgaaaaaatagagagtg 23094146  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtgat 253  Q
    || || ||| |||||||  || ||||||||||||||||||    
T  23094145 gg-gt-ccacataaaataaaacacacacattagtagtgat 23094108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 32081176 - 32081260
Alignment:
Q  166 agtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||  ||||||  ||||||  ||  |||||||||||||||    
T  32081176 agtaattatactttgatctaatgt---gtgaattgaaaaaatagagtgtggaggtcccacgtaaaatagaactcacacattagtagtg 32081260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 12879000 - 12878943
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagt 212  Q
    ||||||||| |||||| || ||||| ||||| ||||||||||||||||||||||||||    
T  12879000 attaaacactaagtaaatagactttcatctagtgttgtgtgaattgaaaaaatagagt 12878943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33462211 - 33462264
Alignment:
Q  1 acactttagcgactttctatgagcatagaaatgcgcagggtg-ataatttagat 53  Q
    |||||||||||||| ||||||||||||||||||||||||| | |||||||||||    
T  33462211 acactttagcgactgtctatgagcatagaaatgcgcagggcgcataatttagat 33462264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 40409043 - 40408958
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacacat 243  Q
    ||||||||| || | ||||||||||||||||||||||| |||||| |||||||  |||||||| || ||||||||||||  ||||||||    
T  40409043 attaaacactaaatgattatactttgatctaatgttgtatgaattaaaaaaat--agtgtggg-gtaccaaataaaatagaacacacat 40408958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 31766953 - 31766884
Alignment:
Q  173 atactttgatctaatgttgtgtgaattg-aaaaaatagagtgtgggagtcccaaataaaataagacacaca 242  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||| |||||| ||||||||  |||||||    
T  31766953 atactttgatctaatgtt-tgtgaattgaaaaaaatagattgtgggggtcccacataaaatagaacacaca 31766884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 28601697 - 28601624
Alignment:
Q  175 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacacattagta 248  Q
    ||||||||||| ||  ||||||||| |||||||||| |||||| |||||| ||||||||  ||||||| |||||    
T  28601697 actttgatctagtgcggtgtgaattaaaaaaatagaatgtgggggtcccacataaaatagaacacacaatagta 28601624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 47245227 - 47245142
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacaca 242  Q
    ||||||||| |||| |||| | ||||||||| | |||||||||||||||||||  ||||||||  ||| ||||||||||  |||||||    
T  47245227 attaaacactaagttattaaagtttgatctagtattgtgtgaattgaaaaaat--agtgtggggatcctaaataaaatagaacacaca 47245142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 29985010 - 29985056
Alignment:
Q  187 tgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaata 233  Q
    ||||||||||||||||||||||||||||||  ||||||  |||||||    
T  29985010 tgttgtgtgaattgaaaaaatagagtgtggatgtcccacgtaaaata 29985056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 20521099 - 20520962
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||||||| |||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20521099 gttggaacattagtgtgatgttggaagaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 20521000  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || ||||||||||||||||    
T  20520999 ggggtcccacataaaatagaatacacacattagtagtg 20520962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 7570173 - 7570300
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||| ||| |||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7570173 gttggaacattaatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 7570272  T
Q  216 ggagtcccaaataaaataagacacacat 243  Q
    || |||||  ||||||||  ||||||||    
T  7570273 ggggtcccgcataaaatagaacacacat 7570300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 116 - 250
Target Start/End: Complemental strand, 20175528 - 20175395
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||||||| ||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20175528 gttggaacattagtgtgatgttggaaaataaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgttaattgaaaaaatagagtgtg 20175429  T
Q  216 ggagtcccaaataaaataagacacacattagtagt 250  Q
    || || ||| ||||||||  |||||||||||||||    
T  20175428 gg-gttccacataaaatagaacacacattagtagt 20175395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 757322 - 757459
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  757322 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 757421  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || ||| || |||||||  || ||||||||||||||||    
T  757422 ggggtctcacataaaatagaacacacacattagtagtg 757459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 18473144 - 18473007
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18473144 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacacaaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 18473045  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || ||||||||||||||||    
T  18473044 ggggtcccacataaaatagaacacacacattagtagtg 18473007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 23660447 - 23660584
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23660447 gttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 23660546  T
Q  216 ggagtcccaaataaaataagacac--acattagtagtg 251  Q
    |   ||||| ||||||||| ||||  ||||||||||||    
T  23660547 gagctcccacataaaataaaacacacacattagtagtg 23660584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 23665079 - 23665216
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23665079 gttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 23665178  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |   ||||| |||||||  || ||||||||||||||||    
T  23665179 gagctcccatataaaatagaacacacacattagtagtg 23665216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 46965150 - 46965033
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||||||||||||||||| | |||||| |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46965150 gttggaacattagtgtaatgttggaaaataaattggaagattaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 46965051  T
Q  216 ggagtcccaaataaaata 233  Q
     | | |||| ||||||||    
T  46965050 agggccccacataaaata 46965033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 133 - 251
Target Start/End: Complemental strand, 55326897 - 55326778
Alignment:
Q  133 atgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat 232  Q
    |||||||| ||||||||| |  ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| |||||||    
T  55326897 atgttggatgaaaaattggaagattaaacaccaagtaattata-tttgatctaatgttgtgtgaattgaaaaaatatagtgtgggggtcccacataaaat 55326799  T
Q  233 --aagacacacattagtagtg 251  Q
      || ||||||||||||||||    
T  55326798 agaacacacacattagtagtg 55326778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 14437651 - 14437785
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  14437651 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatactttgatc---tgttgtgtgaattgaaaaaatagagtgtg 14437747  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |  ||| || |||||||  || ||||||||||||||||    
T  14437748 gaggtctcacataaaatagaacacacacattagtagtg 14437785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 18468350 - 18468248
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaa-aaaatagagtgt 214  Q
    |||||||||||  ||| |||||||| ||||||||| |  ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  18468350 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatagtttgatctaatgttgtgtgaattgaaaaaaatagagtgt 18468251  T
Q  215 ggg 217  Q
    |||    
T  18468250 ggg 18468248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 55432323 - 55432228
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacacattagtagtg 251  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||| |||||| | ||||||  ||||||||||||||||    
T  55432323 attaaacaccaagtaattata-tttgatctaatgctgtgtgaattgaaaaaataaagtgtgggggtcccacacaaaatagaacacacattagtagtg 55432228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 3426208 - 3426074
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||||||| ||||||||| | ||||| ||  ||||||||||||||||||||||||| |||| ||||||||||||||   |||||||| ||||    
T  3426208 gttggaacattagtgtgatgttggaaaataaatttaaagattaaacaccaagtaattatactttaatcttatgttgtgtgaatt---aaaatagaatgtg 3426112  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || || ||| |||||||  ||  |||||||||||||||    
T  3426111 ggggtaccacataaaatagaactcacacattagtagtg 3426074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 27710066 - 27709932
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatct-aatgttgtgtgaattgaaaaaatagagtgt 214  Q
    |||||||||||  ||| |||||| | ||||||||| |  ||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||    
T  27710066 gttggaacattgatgtgatgttgaatgaaaaattggaagattaaacaccaagta-ttatactttgattttaatgttgtgtgaattgaaaaaatagagtgt 27709968  T
Q  215 gggagtcccaaataaaataagacacacattagtagtg 251  Q
    ||| |||||| ||||||||  ||| || |||||||||    
T  27709967 ggg-gtcccacataaaatagaacatacgttagtagtg 27709932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 133 - 234
Target Start/End: Original strand, 12964857 - 12964960
Alignment:
Q  133 atgttggaagaaaaatt-gaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattg-aaaaaatagagtgtgggagtcccaaataaa 230  Q
    |||||||| |||||||| |||| |||||||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||||  |||||| |||||    
T  12964857 atgttggatgaaaaattagaatgattaaacaccaagtaattatactttgatttaatgttgcatgaattgaaaaaaatagagtgtggtggtcccacataaa 12964956  T
Q  231 ataa 234  Q
    ||||    
T  12964957 ataa 12964960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 12970766 - 12970892
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  | | |||||||| ||||||| | |  |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||    
T  12970766 gttggaacattgatatgatgttggatgaaaaatcggaagattaaacaccaagtaattatacgttgatttaatgttgtgtgaattgaaaaaataaagtgtg 12970865  T
Q  216 ggagtcccaaataaaataagacacaca 242  Q
    |   ||||| ||||||||  |||||||    
T  12970866 gtgatcccacataaaatagaacacaca 12970892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 3656254 - 3656352
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacac--acattagtagtg 251  Q
    ||||||||||||||||||| |||||||| || |||||||||||||||||||||||| ||| || |||||| ||||||||  ||||  ||||||||||||    
T  3656254 attaaacaccaagtaattaaactttgatttagtgttgtgtgaattgaaaaaatagaatgtaggggtcccacataaaatagaacacggacattagtagtg 3656352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 32473122 - 32473185
Alignment:
Q  136 ttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaatt 199  Q
    ||||| ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||    
T  32473122 ttggatgaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaatt 32473185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 38891215 - 38891138
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaata 233  Q
    |||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |||||| | |||||| ||||||||    
T  38891215 attaaacaccgagtaattaaactttgatctaatgttttgtgaattgaaaaaatatagtgtgag-gtcccacataaaata 38891138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 29351327 - 29351239
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaa-aaaatagagtgtgggagtcccaaataaaataagacacaca 242  Q
    |||||||||||| | |||| ||||||||| | |||||||||||||||| |||||| || ||||  |||||| ||||||||| |||||||    
T  29351327 attaaacaccaatttattaaactttgatccagtgttgtgtgaattgaaaaaaataaagcgtggaggtcccacataaaataaaacacaca 29351239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 7860797 - 7860720
Alignment:
Q  165 aagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacaca 242  Q
    ||||||||| ||||||||||| | |||   ||||||||||||||||||||||  |||||| ||||||||  |||||||    
T  7860797 aagtaattagactttgatctagttttggacgaattgaaaaaatagagtgtggaggtcccacataaaatagaacacaca 7860720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 233
Target Start/End: Original strand, 2206829 - 2206906
Alignment:
Q  156 ttaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaa-aatagagtgtgggagtcccaaataaaata 233  Q
    ||||||||||||| |||| | |||||| || |||||||| ||||||||| ||||||||||||| | |||| ||||||||    
T  2206829 ttaaacaccaagttattaaattttgat-tagtgttgtgtaaattgaaaaaaatagagtgtgggggacccacataaaata 2206906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 12798068 - 12797930
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    ||||||| |||||||| |||||||||||||||||| |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12798068 gttggaatattagtgtgatgttggaagaaaaattggaagattaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 12797969  T
Q  216 gga-gtcccaaataaaat--aagacacacattagtagtg 251  Q
    ||| |||||| |||||||  || ||||||||||||||||    
T  12797968 ggaggtcccacataaaatagaacacacacattagtagtg 12797930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 30652052 - 30651915
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30652052 gttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 30651953  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||  |||||||  || ||||||||||||||||    
T  30651952 ggggtcccgcataaaatagaacacacacattagtagtg 30651915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 18345554 - 18345417
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18345554 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattaaaaaaatagagtgtg 18345455  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || ||||||||||||||||    
T  18345454 ggggtcccacataaaatagaacacacacattagtagtg 18345417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 19891465 - 19891600
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  19891465 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccatgtaattatactttgatctaatcttgtgtgaattgaaaaaatagaatgtg 19891564  T
Q  216 ggagtcccaaataaaataagacacacattagtagtg 251  Q
    ||||||||| ||||||||  |||||||||| |||||    
T  19891565 ggagtcccacataaaatagaacacacattattagtg 19891600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 1933967 - 1934084
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1933967 gttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtggg 1934066  T
Q  216 ggagtcccaaataaaata 233  Q
    |  |||||| ||||||||    
T  1934067 gaggtcccacataaaata 1934084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 20101609 - 20101725
Alignment:
Q  117 ttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgg 216  Q
    |||||| ||| |||| |||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  20101609 ttggaaaattggtgtgatgttggaagaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtcg 20101708  T
Q  217 gagtcccaaataaaata 233  Q
    | || ||| ||||||||    
T  20101709 gggttccacataaaata 20101725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 17967922 - 17968048
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17967922 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacatcaagtaattatactttgatctaatgttgtgtgaattaaaaaaatagagtgtg 17968021  T
Q  216 ggagtcccaaataaaataagacacacat 243  Q
    || |||||| ||||||||  ||||||||    
T  17968022 gg-gtcccacataaaatagaacacacat 17968048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 17974309 - 17974445
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  17974309 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacatcaaataattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt- 17974407  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || ||||||||||||||||    
T  17974408 ggtgtcccacataaaatagaacacacacattagtagtg 17974445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 25496342 - 25496479
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||| |||||| |||| ||||||||| | |||||| |  |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  25496342 gttgtaacatttgtgtgatgttggaaaataaattggaagattaaacaccaaataattatactttgatctaatattgtgtgaattgaaaaaatagagtgtg 25496441  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |  |||||| |||||||  || ||||||||||||||||    
T  25496442 gaggtcccacataaaatagaacacacacattagtagtg 25496479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 29678816 - 29678679
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||| ||||||||||| |||||||||||||||||| |  |||||| || ||| ||||||| ||||||||||||||||||||||||||||||||||||||     
T  29678816 gttgcaacattagtgtgatgttggaagaaaaattggaagattaaatactaaggaattatattttgatctaatgttgtgtgaattgaaaaaatagagtgta 29678717  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    ||  ||||| |||||||  || ||||||||||||||||    
T  29678716 gggatcccacataaaatagaacacacacattagtagtg 29678679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 9179684 - 9179823
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattg--aaaaaatagagtg 213  Q
    ||||||| |||  ||| ||| |||| ||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  9179684 gttggaatattgatgtgatggtggatgaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaaaatagagtg 9179783  T
Q  214 tgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |||| |||||| |||||||  || ||||||||||||||||    
T  9179784 tgggggtcccacataaaatagaacacacacattagtagtg 9179823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 9184375 - 9184514
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattg--aaaaaatagagtg 213  Q
    |||||||||||  ||| |||||||| ||||||||| |  |||||||||||| |||||| ||||||||||||||||||||||||||  |||||||||||||    
T  9184375 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaaataattaaactttgatctaatgttgtgtgaattgaaaaaaaatagagtg 9184474  T
Q  214 tgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |||| |||||| |||||||  || ||||||||||||||||    
T  9184475 tgggggtcccacataaaatagaacacacacattagtagtg 9184514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 12361383 - 12361250
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    ||||||||||||||||  |||||||| | |||||| |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12361383 gttggaacattagtgtggtgttggaaaataaattggaagattaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaatagaatgtg 12361284  T
Q  216 ggagtcccaaataaaataagacacacattagtagtg 251  Q
    |  || ||| ||||||||  | ||||||||||||||    
T  12361283 g--gttccacataaaatagaagacacattagtagtg 12361250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 19897085 - 19896951
Alignment:
Q  117 ttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgg 216  Q
    |||||||||| || | ||||||||||| ||| || |  |||||| | |||||||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  19897085 ttggaacattggtatgatgttggaagagaaaatggaagattaaatatcaagtaattatattttgatataatgttgtgtgaattgaaaaaatagagcgtgg 19896986  T
Q  217 gagtcccaaataaaataagacacacattagtagtg 251  Q
    | |||||| ||||||||  ||||||||||||||||    
T  19896985 gggtcccacataaaatagaacacacattagtagtg 19896951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 42925673 - 42925769
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacacattagtagtg 251  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||  ||||||  |||||||  ||||||||||||||||    
T  42925673 attaaacaccaagtaattaaactttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacgtaaaatagaacacacattagtagtg 42925769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 24536974 - 24537118
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatc-------taatgttgtgtgaattgaaaaaata 208  Q
    ||||||||||| |||| |||||||||||||||||| |  |||||||||||| |||| || ||||||||       |||||||||||||||||||||||||    
T  24536974 gttggaacattggtgttatgttggaagaaaaattggaagattaaacaccaattaatcattctttgatctaatgtttaatgttgtgtgaattgaaaaaata 24537073  T
Q  209 gagtgtgggagtcccaaataaa--ataagacacacattagtagtg 251  Q
    ||||||||| |||||| |||||  |||| ||| ||||||||||||    
T  24537074 gagtgtgggggtcccacataaaatataacacatacattagtagtg 24537118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 25477247 - 25477384
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||||||| |||||| || | |||||| |  |||||||| ||| ||||||||||||||| |||||||||| ||||| |||||||||||||||    
T  25477247 gttggaacattagtgtgatgttgaaaaataaattggaagattaaacatcaaataattatactttgatttaatgttgtgcgaattaaaaaaatagagtgtg 25477346  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |  |||  | |||||||  || ||||||||||||||||    
T  25477347 gtggtcttacataaaatagaacacacacattagtagtg 25477384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 31329161 - 31329083
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaata 233  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||  ||||||  |||||||    
T  31329161 attaaacaccaagttattaaactttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacgtaaaata 31329083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 31335882 - 31335804
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaata 233  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||  ||||||  |||||||    
T  31335882 attaaacaccaagttattaaactttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacgtaaaata 31335804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 28604184 - 28604107
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaata 233  Q
    ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| || | |||||| ||||||||    
T  28604184 attaaacaccaagtaattaaattttgatctagtgttgtgtgaattgaaaaaatagagtatgcg-gtcccacataaaata 28604107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 40846479 - 40846537
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattat 174  Q
    ||||||||||| |||| |||||||||||||||||| |  |||||||||||| |||||||    
T  40846479 gttggaacattggtgtgatgttggaagaaaaattggaagattaaacaccaaataattat 40846537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 251
Target Start/End: Original strand, 15446273 - 15446377
Alignment:
Q  148 ttgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacatta 245  Q
    ||||| |||||| ||| ||||||| | |||||||  || |||  ||||||||||||||||||||||| || |||||| |||||||  || ||| ||||||    
T  15446273 ttgaaaaattaagcacaaagtaataagactttgaggtagtgtaatgtgaattgaaaaaatagagtgttgg-gtcccacataaaatagaacacatacatta 15446371  T
Q  246 gtagtg 251  Q
    ||||||    
T  15446372 gtagtg 15446377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 32080474 - 32080388
Alignment:
Q  158 aaacaccaagtaattatactttgatctaatgttgtgtgaattgaa-aaaatagagtgtgggagtcccaaataaaataagacacacat 243  Q
    ||||||||||| || | ||||||| | ||| |||||||||||||| |||||||||| |||  |||||| ||||||||  ||||||||    
T  32080474 aaacaccaagtcatgagactttgaaccaatattgtgtgaattgaaaaaaatagagtttggaggtcccacataaaatagaacacacat 32080388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 40846622 - 40846677
Alignment:
Q  198 ttgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    ||||||||||||||||||||  ||||| |||||||  || ||||||||||||||||    
T  40846622 ttgaaaaaatagagtgtggggatcccacataaaatagaacacacacattagtagtg 40846677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 37247757 - 37247894
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37247757 gttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 37247856  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||  |||||||  || ||||||||||||||||    
T  37247857 ggggtcccgcataaaatagaacacacacattagtagtg 37247894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 6154390 - 6154527
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6154390 gttggaacattgatgtgatgttggatgaaaaattggaaaattaaacatcaagtaattatattttgatctaatgttgtgtgaattgaaaaaatagagtgtg 6154489  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || ||||||||||||||||    
T  6154490 ggggtcccacataaaatagaacacacacattagtagtg 6154527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 26668416 - 26668279
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26668416 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 26668317  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || ||||||||||||||||    
T  26668316 ggggtcccacataaaatagaacacacacattagtagtg 26668279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 26940013 - 26939876
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26940013 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaaataattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 26939914  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || ||||||||||||||||    
T  26939913 ggggtcccacataaaatagaacacacacattagtagtg 26939876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 7452893 - 7452756
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7452893 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacacaaagtaattatactctgatctaatgttgtgtgaattgaaaaaatagagtgtg 7452794  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || ||||||||||||||||    
T  7452793 ggggtcccacataaaatagaacacacacattagtagtg 7452756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 39519523 - 39519397
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| |||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39519523 gttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaaatatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 39519424  T
Q  216 ggagtcccaaataaaataagacacaca 242  Q
    || |||||  ||||||||  |||||||    
T  39519423 ggggtcccgcataaaatagaacacaca 39519397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 29166931 - 29167068
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29166931 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatactttgatttaatgttgtgtgaattgaaaaaatagagtgtg 29167030  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
     | |||| | |||||||  || ||||||||||||||||    
T  29167031 agggtcctacataaaatagaacacacacattagtagtg 29167068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 36424776 - 36424639
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| ||||||||  |||||||| |  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36424776 gttggaacattgatgtgatgttggataaaaaattggaagattaaacaccaagtaattatactatgatctaatgttgtgtgaattgaaaaaatagagtgtg 36424677  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || ||| || |||||||  || ||||||||||||||||    
T  36424676 ggggtctcacataaaatagaacacacacattagtagtg 36424639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 23757134 - 23757248
Alignment:
Q  128 gtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaat 227  Q
    |||| |||||||||||||||||| |  |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |     
T  23757134 gtgtgatgttggaagaaaaattggaagattaaacaccaagtaattatacttagatttaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacac 23757233  T
Q  228 aaaataagacacaca 242  Q
    ||||||  |||||||    
T  23757234 aaaatagaacacaca 23757248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 23822590 - 23822704
Alignment:
Q  128 gtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaat 227  Q
    |||| |||||||||||||||||| |  |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |     
T  23822590 gtgtgatgttggaagaaaaattggaagattaaacaccaagtaattatacttagatttaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacac 23822689  T
Q  228 aaaataagacacaca 242  Q
    ||||||  |||||||    
T  23822690 aaaatagaacacaca 23822704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 37646013 - 37646139
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| ||| | || ||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37646013 gttggaacattgatgtgatgcttgatgaaaaattggaagattaaacatcaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 37646112  T
Q  216 ggagtcccaaataaaataagacacaca 242  Q
    || |||||| ||||||||  |||||||    
T  37646113 ggggtcccacataaaatagaacacaca 37646139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 39524162 - 39524056
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| |||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39524162 gttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaaataaatatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 39524063  T
Q  216 ggagtcc 222  Q
    || ||||    
T  39524062 ggggtcc 39524056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 20180113 - 20180248
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    ||||||||||| |||| ||| ||| |||||||||| |  ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||  ||||    
T  20180113 gttggaacattggtgtgatgctggtagaaaaattggaagattaaacaccaagtaattatactttaatctaatgttgtgtgaattgagaaaataggatgtg 20180212  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |||  |||| |||||||  || ||||||||||||||||    
T  20180213 gga--cccacataaaatagaacacacacattagtagtg 20180248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 10759320 - 10759456
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||||||| ||||||||| | |||||| |  ||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||     
T  10759320 gttggaacattagtgtgatgttggaaaataaattggaagattaaacac-aagtaattatattttgatttaatgttgtgtgaattaaaaaaatagagtgta 10759418  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || | ||||||||||||||    
T  10759419 ggggtcccacataaaatagaacagacacattagtagtg 10759456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 40150333 - 40150243
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaa 206  Q
    |||||||||||||||| |||||| || | |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40150333 gttggaacattagtgtgatgttgaaaaataaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaa 40150243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 35678895 - 35678993
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||  |||||||| |||||||  || ||||||||||||||||    
T  35678895 attaaacatcaagtaattaaactttgatctagtgttgtgtgaattgaaaaaatagagtgtaagagtcccacataaaatagaacacacacattagtagtg 35678993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 36430654 - 36430519
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  |||||| | |  ||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  36430654 gttggaacattgatgtgatgttggatgaaaaattggaagattaaatatc--gtaattatattttaatctaatgttgtgtgaattgaaaaaatagagtgtg 36430557  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || ||||||||||||||||    
T  36430556 ggggtcccacataaaatagaacacacacattagtagtg 36430519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 37536934 - 37537020
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacaca 242  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||  |||||||    
T  37536934 attaaacatcaagtaattatactttgatataatgttgtgtgaattgaaaaaatagagtgtggg-gtcccacataaaatagaacacaca 37537020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 12104183 - 12104105
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgt 194  Q
    |||||||||||||||| |||||||||||||||||  |  || |||||||||||||||||||||||||||||||||||||    
T  12104183 gttggaacattagtgtgatgttggaagaaaaattagaagatgaaacaccaagtaattatactttgatctaatgttgtgt 12104105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 6511614 - 6511698
Alignment:
Q  169 aattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    ||||||| |||||||||||||||||||||||||||||||  ||||||||||||||| |||||||  ||  |||||||||||||||    
T  6511614 aattatattttgatctaatgttgtgtgaattgaaaaaattaagtgtgggagtcccacataaaatagaactcacacattagtagtg 6511698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 4872981 - 4872894
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacaca 242  Q
    |||||||||||| | |||| |||||||| || ||||||||||||||||||||||||||||||| || ||| ||||||||  |||||||    
T  4872981 attaaacaccaaattattaaactttgatttagtgttgtgtgaattgaaaaaatagagtgtgggggttccatataaaatagaacacaca 4872894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 17162955 - 17162869
Alignment:
Q  157 taaacaccaagt-aattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacaca 242  Q
    |||||||||||| ||||| | | |||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||  |||||||    
T  17162955 taaacaccaagttaattagattatgatctaatgttgtatgaattgaaaaaatagaatgtgggagtcccacataaaatagaacacaca 17162869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 9725770 - 9725858
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattg-aaaaaatagagtgtgggagtcccaaataaaataagacacaca 242  Q
    |||||||||||||| |||| |||||||| || |||||||||||||| ||||||||||||||||  |||||| ||||||||  |||||||    
T  9725770 attaaacaccaagttattaaactttgatatagtgttgtgtgaattgaaaaaaatagagtgtggatgtcccacataaaatagaacacaca 9725858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 17159452 - 17159378
Alignment:
Q  179 tgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    ||||||| |||||| ||||||||||||||||| |||||| |||||| |||||||  |||||||||||||||||||    
T  17159452 tgatctagtgttgtatgaattgaaaaaatagaatgtgggtgtcccacataaaatagaagacacacattagtagtg 17159378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 22832503 - 22832563
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    ||||||||||||| ||||| | | |||| || |||||||||||||||||||||||||||||    
T  22832503 attaaacaccaaggaattagattatgatttagtgttgtgtgaattgaaaaaatagagtgtg 22832563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 23689170 - 23689083
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacaca 242  Q
    ||||||||||||  ||||| ||||||||||| || | |||| ||||||||||| |||||||||  ||||| ||||||||  |||||||    
T  23689170 attaaacaccaaacaattagactttgatctagtgatttgtggattgaaaaaattgagtgtggggatcccacataaaatagaacacaca 23689083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 10136463 - 10136326
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10136463 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 10136364  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || ||||||||||||||||    
T  10136363 ggggtcccacataaaatagaacacacacattagtagtg 10136326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 25844894 - 25844757
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25844894 gttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 25844795  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||  |||||||  || ||||||||||||||||    
T  25844794 ggggtcccgcataaaatagaacacacacattagtagtg 25844757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 51040522 - 51040616
Alignment:
Q  159 aacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||  || ||||||||||||||||    
T  51040522 aacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataaagtgtgggagtcccacatgaaatagaacacacacattagtagtg 51040616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 38622288 - 38622210
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaata 233  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38622288 attaaaaatcaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccacataaaata 38622210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 16036705 - 16036607
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||  |||||| |||||||  || ||||||||||||||||    
T  16036705 attaaacaccaagtaactaaactttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacataaaatagaacacacacattagtagtg 16036607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 117 - 251
Target Start/End: Original strand, 16648591 - 16648725
Alignment:
Q  117 ttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt-g 215  Q
    ||||||||||||||| || |||||| | |||||  |  |||||||||   |||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  16648591 ttggaacattagtgtgattttggaaaataaattagaagattaaacac---gtaattatactttgatctaatgttgtgtaaattgaaaaaatagagtgtag 16648687  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || ||||||||||||||||    
T  16648688 ggggtcccacataaaatagaacacacacattagtagtg 16648725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 23191836 - 23191932
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacacattagtagtg 251  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| ||| || | || | || ||||||||||||||||    
T  23191836 attaaacaccaagttattaaactttgatctagtgttgtgtgaattgaaaaaatagagtgtgggggtcacataaaatagaacacacacattagtagtg 23191932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 40167039 - 40166941
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |||||||||||||| |||| ||||||||||| | |||||||||||||||||||||| ||| || ||||||||||||||  ||||||||||| |||||||    
T  40167039 attaaacaccaagttattaaactttgatctagtattgtgtgaattgaaaaaatagaatgtaggggtcccaaataaaatagaagacacacatcagtagtg 40166941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 26926687 - 26926773
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaa 202  Q
    |||||||||||  ||| |||||||| ||||||||| |  |||||||||||| ||||||||||||||| |||||||||||||||||||    
T  26926687 gttggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaactaattatactttgatttaatgttgtgtgaattgaa 26926773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 5100133 - 5100220
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaa 204  Q
    |||| ||||||||||| ||||||||| | |||||| |  ||||||||| ||||||||||||||| |||||||||| |||||||||||||    
T  5100133 gttgtaacattagtgtgatgttggaaaataaattggaagattaaacac-aagtaattatactttaatctaatgttatgtgaattgaaaa 5100220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 212
Target Start/End: Complemental strand, 8138727 - 8138634
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagt 212  Q
    |||||||||||  ||| || ||||||||||||||| |  ||||||    |||||||||||||||||| |||| ||||||||||||||||||||||||    
T  8138727 gttggaacattgatgtgatcttggaagaaaaattggaagattaaa---taagtaattatactttgatataatattgtgtgaattgaaaaaatagagt 8138634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 19797990 - 19798070
Alignment:
Q  154 aattaaacaccaagtaattatactttgatctaatgttgtgtgaattg-aaaaaatagagtgt-gggagtcccaaataaaata 233  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| ||||| ||| |||||| ||||||||    
T  19797990 aattaaataccaagtaattata-tttgatctaatgttgtgtgaattgaaaaaaataaagtgtggggggtcccacataaaata 19798070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 46697400 - 46697336
Alignment:
Q  167 gtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaata 233  Q
    ||||||| |||||||| || |||||||||||||||||||||||||| |||  |||||| ||||||||    
T  46697400 gtaattagactttgatttagtgttgtgtgaattgaaaaaatagagtatgg--gtcccacataaaata 46697336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 39586079 - 39586156
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaata 233  Q
    |||||| | ||||| |||| |||||||| || | |||||| |||||||||||||||||||||  |||||| ||||||||    
T  39586079 attaaagatcaagttattaaactttgatatagtattgtgt-aattgaaaaaatagagtgtggaggtcccacataaaata 39586156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 40124852 - 40124989
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| |||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40124852 gttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaaatatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 40124951  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||  |||||||  || ||||||||||||||||    
T  40124952 ggggtcccgcataaaatagaacacacacattagtagtg 40124989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 1808588 - 1808463
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||||||| ||||||||| | |||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1808588 gttggaacattagtgtgatgttggaaaataaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatatagtgtg 1808489  T
Q  216 ggagtcccaaataaaataagacacaca 242  Q
    || |||||| ||||||||  |||||||    
T  1808488 gg-gtcccatataaaatagaacacaca 1808463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 38181248 - 38181377
Alignment:
Q  124 attagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtccc 223  Q
    ||||||||  ||||||||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  38181248 attagtgtgttgttggaagaaaaattggaacattaaacatcaagtaattatactttgatctaatgttgtgtgaattgaaaaaataaagtgtgagagtccc 38181347  T
Q  224 aaataaaat--aagacacacattagtagtg 251  Q
    | |||||||  || ||||||||||||||||    
T  38181348 acataaaatagaacacacacattagtagtg 38181377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 1909905 - 1910022
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||||| | ||||||||| | |||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1909905 gttggaacattagtatgatgttggaaaataaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 1910004  T
Q  216 ggagtcccaaataaaata 233  Q
    |  |||||| || |||||    
T  1910005 gatgtcccacatgaaata 1910022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 17021345 - 17021257
Alignment:
Q  164 caagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||  || ||||||||||||||||    
T  17021345 caagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggg-gtcccacataaaatagaacacacacattagtagtg 17021257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 17551782 - 17551694
Alignment:
Q  164 caagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||  || ||||||||||||||||    
T  17551782 caagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggg-gtcccacataaaatagaacacacacattagtagtg 17551694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 44924879 - 44925016
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||||||| ||||||||| | |||||| |  ||||||||| ||  ||||||||||||||||||| ||||||||||||||||| |||||| ||    
T  44924879 gttggaacattagtgtgatgttggaaaataaattggaagattaaacactaatcaattatactttgatctaatcttgtgtgaattgaaaaattagagtttg 44924978  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |  |||||| |||||||  || ||||||||||||||||    
T  44924979 gaggtcccacataaaatagaaaacacacattagtagtg 44925016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 26780228 - 26780105
Alignment:
Q  129 tgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaata 228  Q
    ||||||||||||||||||||| ||  ||||||||| ||||||||||||| | || ||||||||||||||||| |||| ||||||||||| |||||| |||    
T  26780228 tgtaatgttggaagaaaaattaaaagattaaacactaagtaattatactctaatttaatgttgtgtgaattg-aaaactagagtgtgggtgtcccacata 26780130  T
Q  229 aaat--aagacacacattagtagtg 251  Q
    ||||  || ||||||||||||||||    
T  26780129 aaatagaacacacacattagtagtg 26780105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 128 - 251
Target Start/End: Complemental strand, 2966711 - 2966586
Alignment:
Q  128 gtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaat 227  Q
    |||| |||||||||||||||||| |  |||||||| ||| |||||||| ||| |||||||||| || ||||||||||||||||||||| | |||||| ||    
T  2966711 gtgtgatgttggaagaaaaattggaagattaaacatcaaataattatatttttatctaatgttatgggaattgaaaaaatagagtgtgagggtcccatat 2966612  T
Q  228 aaaat--aagacacacattagtagtg 251  Q
    |||||  || ||||||||||||||||    
T  2966611 aaaatagaacacacacattagtagtg 2966586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 15950528 - 15950656
Alignment:
Q  118 tggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaat----tatactttgatctaatgttgtgtgaattgaaaaaatagagtg 213  Q
    |||||||||  ||| |||||||| ||||||||| |  | |||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||    
T  15950528 tggaacattgatgtgatgttggatgaaaaattggaagactaaacaccaagtaattaattatactttgatctaatgttgtgtgaattgaaaaaatagagtg 15950627  T
Q  214 tgggagtcccaaataaaataagacacaca 242  Q
    |||  || ||| ||||||||  |||||||    
T  15950628 tggaggtgccacataaaatagaacacaca 15950656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 7002755 - 7002646
Alignment:
Q  144 aaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacac 241  Q
    |||||||||  ||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||  || || |||||||  || ||| ||    
T  7002755 aaaattgaaagattaaacaccaagtaattagactttgatctagtattgtgtgaattgaaaaaatagagtgtggggatctcacataaaatagaatacatac 7002656  T
Q  242 attagtagtg 251  Q
    ||||||||||    
T  7002655 attagtagtg 7002646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 28559075 - 28559211
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    ||||||| |||  ||||||||| |||||||||||| |  |||||||||||| || ||||||||| ||||||||||||||  || ||||||||||||||||    
T  28559075 gttggaaaattgatgtaatgttcgaagaaaaattggaagattaaacaccaaata-ttatactttaatctaatgttgtgtacatggaaaaaatagagtgtg 28559173  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |  |||||| |||||||  || ||||||||||||||||    
T  28559174 gaggtcccacataaaatagaacacacacattagtagtg 28559211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 18875360 - 18875470
Alignment:
Q  133 atgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat 232  Q
    |||||||||||||||||| |  |||||| ||  |||||||| | ||||||||||||||||||||||||||||||||| |||| || |||||| ||| |||    
T  18875360 atgttggaagaaaaattggaagattaaatactgagtaattaaattttgatctaatgttgtgtgaattgaaaaaatagtgtgtaggggtcccacatacaat 18875459  T
Q  233 aagacacacat 243  Q
    |  ||||||||    
T  18875460 agaacacacat 18875470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 251
Target Start/End: Original strand, 28564258 - 28564390
Alignment:
Q  118 tggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggg 217  Q
    |||||||||  | |||||||||||||||||||| |  |||||||||||| || ||||||||||||||||||||||||  |||||||||||  |||||||     
T  28564258 tggaacattcatataatgttggaagaaaaattggaagattaaacaccaaata-ttatactttgatctaatgttgtgtacattgaaaaaat--agtgtgga 28564354  T
Q  218 agtcccaaataaaat--aagacacacattagtagtg 251  Q
     || ||| |||||||  || ||||||||||||||||    
T  28564355 ggttccacataaaatagaacacacacattagtagtg 28564390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 17953164 - 17953206
Alignment:
Q  175 actttgatctaatgttgtgtgaattgaaaaaatagagtgtggg 217  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  17953164 actttgatctagtgttgtgtgaattgaaaaaatagagtgtggg 17953206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 23547569 - 23547663
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaataga 210  Q
    ||||||||||| || |||||||| |||||||||||||  ||||||||   | |||||||| ||| |||||||||||  ||||| |||||||||||    
T  23547569 gttggaacattggtttaatgttgaaagaaaaattgaaagattaaacattgaataattatattttaatctaatgttgcatgaatcgaaaaaataga 23547663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 17798124 - 17798071
Alignment:
Q  177 tttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaa 230  Q
    ||||||||| |||||||||||||||||||||| ||||||| ||| ||| |||||    
T  17798124 tttgatctagtgttgtgtgaattgaaaaaatatagtgtggaagtaccacataaa 17798071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 17027224 - 17027130
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaa-ttgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 214  Q
    |||||||||||| ||| |||||||| |||||| ||| |  |||||||||||| |||||||| ||      |||||||||||||||||||||||||| |||    
T  17027224 gttggaacattaatgtgatgttggatgaaaaaattggaagattaaacaccaa-taattatattt------aatgttgtgtgaattgaaaaaatagattgt 17027132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 17557716 - 17557622
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaa-ttgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 214  Q
    |||||||||||| ||| |||||||| |||||| ||| |  |||||||||||| |||||||| ||      |||||||||||||||||||||||||| |||    
T  17557716 gttggaacattaatgtgatgttggatgaaaaaattggaagattaaacaccaa-taattatattt------aatgttgtgtgaattgaaaaaatagattgt 17557624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 33417595 - 33417531
Alignment:
Q  189 ttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    ||||||||||||||||||||||||||  | ||| || |||||||  || ||||||||||||||||    
T  33417595 ttgtgtgaattgaaaaaatagagtgtatgggtctcacataaaatagaacacacacattagtagtg 33417531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 4931361 - 4931224
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| |||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4931361 gttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatataatgttgtgtgaattgaaaaaatagagtgtg 4931262  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||  |||||||  || ||||||||||||||||    
T  4931261 ggggtcccgcataaaatagaacacacacattagtagtg 4931224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 12802420 - 12802304
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||||||| ||||||||| | |||||| |  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12802420 gttggaacattagtgtgatgttggaaaataaattggaagattaaacaccaagtaattatactttaatctaatgttgtgtgaattgaaaaaatagagtgtg 12802321  T
Q  216 ggagtcccaaataaaata 233  Q
    || |||||| ||||||||    
T  12802320 gg-gtcccacataaaata 12802304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 248
Target Start/End: Complemental strand, 21672342 - 21672209
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    ||||||||||| |||| |||||||||||||||||| |  | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  21672342 gttggaacattggtgtgatgttggaagaaaaattggaagaataaacaccaagtaattatactttgatctaacgttgtgtgaattgaaaaaatagaatgtg 21672243  T
Q  216 ggagtcccaaataaaata-ag-acacacattagta 248  Q
    ||| ||||| |||||||| || |||||||||||||    
T  21672242 gga-tcccacataaaatagagcacacacattagta 21672209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 248
Target Start/End: Complemental strand, 2595905 - 2595774
Alignment:
Q  119 ggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggga 218  Q
    ||||||||  |||||||||||||||||||||| |  |||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||     
T  2595905 ggaacattgatgtaatgttggaagaaaaattggaagattaaacaccaaataattacactttaatctaatgttgtgtgaattgaaaaaatagagtgtgggt 2595806  T
Q  219 gtcccaaataaaat--aagacacacattagta 248  Q
     ||||| |||||||  || |||||||||||||    
T  2595805 atcccacataaaatagaacacacacattagta 2595774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 3046711 - 3046575
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||| |||||| |||| ||||||||||||||||||||  ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||  ||||||    
T  3046711 gttgaaacattggtgtgatgttggaagaaaaattgaaagattaaacaccaagtaattataatttgatataaagttgtgtgaattgaaaaaattaagtgtg 3046612  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || ||||||||||||||||    
T  3046611 gg-gtcccacataaaatagaacacacacattagtagtg 3046575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 251
Target Start/End: Original strand, 42625538 - 42625673
Alignment:
Q  117 ttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgg 216  Q
    ||||||||||||||| || ||| || | |||||| |  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42625538 ttggaacattagtgtgat-ttgaaaaataaattggaagattaaacaccaagtaattatactttgatctaatgttatgtgaattgaaaaaatagagtgtgg 42625636  T
Q  217 gagtcccaaataaaat--aagacacacattagtagtg 251  Q
    | |||||| |||||||  ||  |||||||||||||||    
T  42625637 gggtcccacataaaatagaactcacacattagtagtg 42625673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 44508271 - 44508381
Alignment:
Q  133 atgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat 232  Q
    |||||||| ||||||||| |  |||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||    
T  44508271 atgttggatgaaaaattggaagattaaatatcaagtaattatactttgatctaatattgtgtgaattgaaaaaatagagtgtgggaatcccatataaaat 44508370  T
Q  233 aagacacacat 243  Q
    |  ||||||||    
T  44508371 agaacacacat 44508381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 3881092 - 3880983
Alignment:
Q  133 atgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat 232  Q
    |||||||||||||||||| |  |||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| || |||||||    
T  3881092 atgttggaagaaaaattggaagattaaataccaagtaattatactttgatctaatattgcgtgaattgaaaaaatagagtgtgggggtctcacataaaat 3880993  T
Q  233 aagacacaca 242  Q
    |  |||||||    
T  3880992 agaacacaca 3880983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 23151683 - 23151770
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacaca 242  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||  |||||||    
T  23151683 attaaacatcaagtaattatactttgatctaatgttgtgtgaattgaaaaaataaagtgtgggagtcccgcataaaatagaacacaca 23151770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 10392045 - 10392174
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattg--aaaaaatagagtg 213  Q
    ||||||||||| |||| | ||||| || ||||| |||  ||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  10392045 gttggaacattggtgtgaagttgggaggaaaatcgaaagattaaacaccaagtaattatactttgatctagtgttgtgtgaattgaaaaaaaatagagtg 10392144  T
Q  214 tgggagtcccaaataaaataagacacacat 243  Q
    || | | |||| ||||||||  ||||||||    
T  10392145 tgagggccccacataaaatagaacacacat 10392174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 12257159 - 12257023
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    ||||||||||| |||| ||||||||| | || ||| |  ||||| |||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  12257159 gttggaacattggtgtgatgttggaatagaatttggaagattaatcaccaaataattatactttgatttaatgttgtgtaaattgaaaaaatagagtgtg 12257060  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || |||| |||||||||||    
T  12257059 gg-gtcccacataaaatagaacacacgcattagtagtg 12257023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 23247556 - 23247615
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 214  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23247556 attaaacaccaagtaattatactttgatctaatgttatgtgaattgaaaaaatagagtgt 23247615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 26342343 - 26342208
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||| ||| |||||||| ||||||||  |  |||||| | |||||||||||||||| || |||| || ||||||||||||||||  ||||||    
T  26342343 gttggaacattaatgtgatgttggatgaaaaattcgaagattaaatatcaagtaattatactttaatttaatattatgtgaattgaaaaaat--agtgtg 26342246  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||||||  || ||||||||||||||||    
T  26342245 ggggtcccacataaaatagaacacacacattagtagtg 26342208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 8269436 - 8269331
Alignment:
Q  121 aacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagt 220  Q
    ||||||||||| |||||| || | |||||| | ||||||     ||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||    
T  8269436 aacattagtgttatgttgaaaaataaattggaaaattaa-----aagtaattatactttgatctaatattgtgtgaattgaataaatagagtgtgagagt 8269342  T
Q  221 cccaaataaaa 231  Q
     ||| ||||||    
T  8269341 tccacataaaa 8269331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 30259361 - 30259283
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaata 233  Q
    |||||| |||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||||||  ||| ||||||||    
T  30259361 attaaataccaagtaattaaactttgatctagtgttttgtaaattgaaaaaatagagtgtgggagatccacataaaata 30259283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 4580554 - 4580466
Alignment:
Q  165 aagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    ||||||||| |||||||| || ||||||||||||| |||||||||||||| || |||||| |||||||  || ||||||||||||||||    
T  4580554 aagtaattaaactttgatttagtgttgtgtgaattaaaaaaatagagtgtaggggtcccatataaaatagaacacacacattagtagtg 4580466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 26286153 - 26286253
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattg--aaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagt 250  Q
    ||||||||||||||||||| ||||||||||| |||||| | |||||  |||||| | |||||||| |||||| |||||||  || |||||||||||||||    
T  26286153 attaaacaccaagtaattaaactttgatctagtgttgtataaattgaaaaaaaaaatagtgtgggggtcccacataaaatagaacacacacattagtagt 26286252  T
Q  251 g 251  Q
    |    
T  26286253 g 26286253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 13313331 - 13313409
Alignment:
Q  175 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |||||||| || | ||||||||||||||||||||||||||||  |||||| |||||||  || ||||||||||||||||    
T  13313331 actttgatttagtattgtgtgaattgaaaaaatagagtgtggatgtcccacataaaatagaacacacacattagtagtg 13313409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 10387346 - 10387391
Alignment:
Q  158 aaacaccaagtaattatactttgatctaatgttgtgtgaattgaaa 203  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||    
T  10387346 aaacaccaagtaattatactttgatctagtgttgtgtgaatagaaa 10387391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 15973819 - 15973725
Alignment:
Q  158 aaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagt 250  Q
    ||||||||||| || | ||||||| ||| |||||||||||| ||||||||| |||||||  ||| || |||||||  || |||||||||||||||    
T  15973819 aaacaccaagtcatgaaactttgagctagtgttgtgtgaatcgaaaaaataaagtgtggaggtcgcacataaaatagaacacacacattagtagt 15973725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 12181796 - 12181847
Alignment:
Q  202 aaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |||||||||||||||| |||||| |||||||  || ||||||||||||||||    
T  12181796 aaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtg 12181847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 116 - 247
Target Start/End: Complemental strand, 5107 - 4977
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||| |||| |||| ||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5107 gttggatcattggtgtgatgttggaagaaaaattgaaagattaaacaccacgtaattatactttgatctaatgttgtgtgaattgaaaaaatatagtgtg 5008  T
Q  216 ggagtcccaaataaaataagacacacattagt 247  Q
    || || ||| ||||||||  ||||| ||||||    
T  5007 gg-gtaccacataaaatataacacatattagt 4977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 16835119 - 16835257
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaatt-gaaaaaatagagtgt 214  Q
    |||||||||||  ||| |||||||| |||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||    
T  16835119 gttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagtaaatatactttgatctaatgttgtgtgaattaaaaaaaatagagtgt 16835218  T
Q  215 gggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    ||| |||||| |||||||  || ||||||||||||||||    
T  16835219 gggggtcccacataaaatagaacacacacattagtagtg 16835257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 120 - 251
Target Start/End: Original strand, 17963520 - 17963653
Alignment:
Q  120 gaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggag 219  Q
    |||||||  ||| |||||||| ||||||||| |  |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |    
T  17963520 gaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaactatactttgatctaatgatgtgtgaattgaaaaaatagagtgtggggg 17963619  T
Q  220 tcccaaataaaat--aagacacacattagtagtg 251  Q
    ||||| |||||||  || ||||||||||||||||    
T  17963620 tcccacataaaatagaacacacacattagtagtg 17963653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 134 - 251
Target Start/End: Original strand, 6406836 - 6406955
Alignment:
Q  134 tgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat- 232  Q
    ||||||| |||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||   |||||||     
T  6406836 tgttggatgaaaaattgaaagattaaacaccaagtaattatactttgatctattgttgtgtgaattgaaaaaatagagtgtgggggtcctgcataaaata 6406935  T
Q  233 -aagacacacattagtagtg 251  Q
     || ||||||||||||||||    
T  6406936 gaacacacacattagtagtg 6406955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 17600497 - 17600398
Alignment:
Q  134 tgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaata 233  Q
    ||||||||||||||||| |  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||    
T  17600497 tgttggaagaaaaattggaagattaaacaccaagtaatcatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgagggtcccacataaaata 17600398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 11569651 - 11569775
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||||||| |||||| || | |||||  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11569651 gttggaacattagtgtgatgttgcaa-ataaattagaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 11569749  T
Q  216 ggagtcccaaataaaataagacacaca 242  Q
    || |||||| ||||||||  |||||||    
T  11569750 gg-gtcccacataaaatagaacacaca 11569775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 22694347 - 22694436
Alignment:
Q  120 gaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatag 209  Q
    ||||||| |||| |||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22694347 gaacattggtgtgatgttggaagaaaaattggaagattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatag 22694436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 11533660 - 11533785
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||||||| ||||||||  | |||||  |  ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  11533660 gttggaacattagtgtgatgttggagaataaattagaagattaaacaccaagtaattatagtttgatctaatgttgtgtgaattgaaaaaataaagtgtg 11533759  T
Q  216 ggagtcccaaataaaataagacacaca 242  Q
    || |||||| ||||||||  |||||||    
T  11533760 gg-gtcccacataaaatagaacacaca 11533785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 11559170 - 11559295
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||||||| ||||||||  | |||||  |  ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  11559170 gttggaacattagtgtgatgttggagaataaattagaagattaaacaccaagtaattatagtttgatctaatgttgtgtgaattgaaaaaatacagtgtg 11559269  T
Q  216 ggagtcccaaataaaataagacacaca 242  Q
    || |||||| ||||||||  |||||||    
T  11559270 gg-gtcccacataaaatagaacacaca 11559295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 251
Target Start/End: Original strand, 20747256 - 20747392
Alignment:
Q  117 ttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgg 216  Q
    |||||||||| |||| | ||| |||| ||||||| |  |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20747256 ttggaacattggtgttaagtttgaaggaaaattggaagattaaacatcaagtaattatactttgatttaatgttgtgtgaattgaaaaaatagagtgtgg 20747355  T
Q  217 gagtcccaaataaaataagac--acacattagtagtg 251  Q
    | |||| | ||||||||  ||  ||||||||||||||    
T  20747356 gggtcctacataaaatagaacttacacattagtagtg 20747392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 233
Target Start/End: Complemental strand, 11429094 - 11428978
Alignment:
Q  117 ttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgg 216  Q
    ||||||||||  |||| | ||||| ||||||||| |  |||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11429094 ttggaacattgatgtacttttggatgaaaaattggaagattaaacaccagataattatactttgatctaatgttgcgtgaattgaaaaaatagagtgtgg 11428995  T
Q  217 gagtcccaaataaaata 233  Q
    | |||||| || |||||    
T  11428994 gggtcccacattaaata 11428978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 253
Target Start/End: Original strand, 12405335 - 12405457
Alignment:
Q  133 atgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat 232  Q
    |||||||||||||||||| |  |||||||| ||| |||||||| |||||||||||||||||| |||| ||||||||||||||||   || ||||||||||    
T  12405335 atgttggaagaaaaattggaagattaaacatcaactaattatattttgatctaatgttgtgttaattaaaaaaatagagtgtggagatcacaaataaaat 12405434  T
Q  233 --aagacacacattagtagtgat 253  Q
      || ||||||||||||||||||    
T  12405435 agaacacacacattagtagtgat 12405457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 12797779 - 12797857
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaata 233  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||    
T  12797779 attaaacaccaagtaattagactttgatctagtgttgtgtgaattgaaaaaatagagtgtgtgggtcccacataaaata 12797857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 120 - 234
Target Start/End: Original strand, 33686606 - 33686719
Alignment:
Q  120 gaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggag 219  Q
    |||||||| ||| ||||||||| | |||||| |  |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  33686606 gaacattaatgtgatgttggaaaataaattggaagattaaacatcaaataattatactttgatctaattttgtgtgaattgaaaaaatagagtgtggg-g 33686704  T
Q  220 tcccaaataaaataa 234  Q
    | ||| |||||||||    
T  33686705 ttccacataaaataa 33686719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 251
Target Start/End: Original strand, 19994344 - 19994479
Alignment:
Q  117 ttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgg 216  Q
    ||||| |||| |||| |||||||||||||||||| |  ||||||||| | ||||||||||||| ||| |||||| |||||||| ||||||||||||||||    
T  19994344 ttggatcattggtgtgatgttggaagaaaaattggaagattaaacactaggtaattatactttaatcgaatgttatgtgaatt-aaaaaatagagtgtgg 19994442  T
Q  217 gagtcccaaataaaat--aagacacacattagtagtg 251  Q
    | ||||||  ||||||  || ||||||||||||||||    
T  19994443 gggtcccacgtaaaatagaacacacacattagtagtg 19994479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 12690068 - 12689970
Alignment:
Q  154 aattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    ||||||||||||| | |||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||  || ||||||||||||||||    
T  12690068 aattaaacaccaaattattaaactttgatctagtgttgtgtgaattgaaaaaatagagtgt-ggagtcccacataaaatagaacacacacattagtagtg 12689970  T

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Target: chr6; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 2699072 - 2699210
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattg-aaaaaatagagtgt 214  Q
    |||||||||| ||| | ||||||||| | |||||| |  |||||||| |||||||||||||||| |||||||||||||||||| | |||| |||||||||    
T  2699072 gttggaacatcagtatgatgttggaaaataaattggaagattaaacatcaagtaattatactttaatctaatgttgtgtgaatggtaaaatatagagtgt 2699171  T
Q  215 gggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    ||| |||||| |||||||  ||  |||||||||||||||    
T  2699172 gggggtcccacataaaatagaattcacacattagtagtg 2699210  T

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Target: chr6; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 11612862 - 11612998
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatacttt--gatctaatgttgtgtgaattgaaaaaatagagtg 213  Q
    ||||||||||| |||  |||||||||| ||||||||| |||||||||  |||||||||||||||  ||||||||||| | | ||||||||||||||||||    
T  11612862 gttggaacattggtg--atgttggaaggaaaattgaaaaattaaacat-aagtaattatactttttgatctaatgttatataaattgaaaaaatagagtg 11612958  T
Q  214 tgggagtcccaaataaaataagacac--acattagtagtg 251  Q
    | |  |||||| ||||||||| ||||  ||||||||||||    
T  11612959 ttgaggtcccacataaaataaaacacacacattagtagtg 11612998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 22610608 - 22610523
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacaca 242  Q
    |||||| |||||||||||| ||||||||||| ||||||||  |||||||||||||| ||||| ||| ||| ||||||||| |||||||    
T  22610608 attaaataccaagtaattagactttgatctattgttgtgt--attgaaaaaatagattgtggcagttccacataaaataaaacacaca 22610523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 5857096 - 5857028
Alignment:
Q  117 ttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaa 186  Q
    ||||||||||||||| |||||||||||||||||| |  |||||||||||| |||||||||||||| ||||    
T  5857096 ttggaacattagtgtgatgttggaagaaaaattggaagattaaacaccaa-taattatactttgacctaa 5857028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 19674871 - 19674785
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacaca 242  Q
    |||||||||||| |||||| ||||||||||| |||||||||||||| ||||| | |||||||| |||| | ||||||||  |||||||    
T  19674871 attaaacaccaaataattaaactttgatctagtgttgtgtgaattggaaaaa-atagtgtgggggtccgacataaaatagaacacaca 19674785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 25313487 - 25313548
Alignment:
Q  172 tatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaata 233  Q
    ||||||||||| ||||||| | |||||||||||||||||||||| | ||| || ||||||||    
T  25313487 tatactttgatataatgttttatgaattgaaaaaatagagtgtgcgggtcacacataaaata 25313548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 26200981 - 26201042
Alignment:
Q  172 tatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaata 233  Q
    ||||||||||| ||||||| | |||||||||||||||||||||| | ||| || ||||||||    
T  26200981 tatactttgatataatgttttatgaattgaaaaaatagagtgtgcgggtcacacataaaata 26201042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 29891923 - 29891991
Alignment:
Q  120 gaacattagtgtaatgttggaagaaaaa-ttgaataattaaacaccaagtaattatactttgatctaat 187  Q
    ||||||| |||| |||||| |||||||| ||| |  ||||||||| |||||||| ||||||||||||||    
T  29891923 gaacattggtgtgatgttgaaagaaaaaattggaagattaaacacaaagtaattgtactttgatctaat 29891991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 5202 - 5065
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||| |||||||| |||||||||||  |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  5202 gttggaacattgatgtgatgttggatgaaaaattgaaagattaaacaccaagttaatatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 5103  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||  |||||||  || || |||||||||||||    
T  5102 ggggtcccgcataaaatagaacactcacattagtagtg 5065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 442898 - 443023
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    ||||||| |||| ||| ||||||||| | |||||| |  ||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  442898 gttggaatattactgtgatgttggaaaataaattggaagattaaacattaaataattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 442997  T
Q  216 ggagtcccaaataaaataagacacaca 242  Q
    || |||||| ||||||||  |||||||    
T  442998 gg-gtcccacataaaatagaacacaca 443023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 251
Target Start/End: Complemental strand, 30313 - 30178
Alignment:
Q  118 tggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggg 217  Q
    |||||||||  ||| |||||||| ||||||||| |  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  30313 tggaacattgatgtgatgttggatgaaaaattggaagattaaacaccaagtaattatattttgatctaatgttgtgtgaattgaaaaaatagagtgtagg 30214  T
Q  218 agtcccaaataaaat--aagacacacattagtagtg 251  Q
      ||||| |||||||  || ||||||||||||||||    
T  30213 gatcccacataaaatagaacacacacattagtagtg 30178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 26540 - 26442
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    |||||||||||| |||||| ||||| |||||  |||||||||||||||||||||||||| ||  |||||| |||||||  || ||||||||||||||||    
T  26540 attaaacaccaaataattaaactttcatctagagttgtgtgaattgaaaaaatagagtgcggaggtcccacataaaatagaacacacacattagtagtg 26442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 251
Target Start/End: Complemental strand, 8247 - 8110
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtg 215  Q
    |||||||||||  ||  |||||||| || |||||| |  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8247 gttggaacattgatgcgatgttggatgataaattggaagattaaacaccaagtaattatactttgatttaatgttgtgtgaattgaaaaaatagagtgtg 8148  T
Q  216 ggagtcccaaataaaat--aagacacacattagtagtg 251  Q
    || |||||| |||| ||  || ||||||||||||||||    
T  8147 ggggtcccacataagatagaacacacacattagtagtg 8110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 36257 - 36158
Alignment:
Q  118 tggaacattagtgtaatgttggaagaaaaattgaataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtggg 217  Q
    |||||||||||||| |||||| || | ||||||||  |||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  36257 tggaacattagtgtgatgttgaaaaataaattgaaagattaaacaccaaataattatattttgatctaatgttgtatgaattgaaaaaatagagtgtggg 36158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 6371 - 6272
Alignment:
Q  116 gttggaacattagtgtaatgttggaagaaaaattga-ataattaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgt 214  Q
    ||||||||||| |||  ||||||||||||||| | | | ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  6371 gttggaacattggtgcgatgttggaagaaaaaattataaaattaaacaccaagtaattatacttcgatctaatgttatgtgaattgaaaaaatagagtgt 6272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 64892 - 64988
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaat--aagacacacattagtagt 250  Q
    ||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||| || |||||| |||||||  || |||||||||||||||    
T  64892 attaaacac-aagtaattaaactttgatctagtgttgtgtgaattaaaaaaatagagtgtaggggtcccacataaaatagaacacacacattagtagt 64988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 3796 - 3884
Alignment:
Q  155 attaaacaccaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccaaataaaataagacacacat 243  Q
    |||||||| ||||| || | ||||||| ||| |||  |||||||| ||||||||||| ||| | ||| || ||||||||| ||||||||    
T  3796 attaaacatcaagttataagactttgagctagtgtgatgtgaattaaaaaaatagagagtgagggtctcacataaaataaaacacacat 3884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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