View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_112 (Length: 266)
Name: NF19103_low_112
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_112 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 150 - 266
Target Start/End: Complemental strand, 4623201 - 4623085
Alignment:
| Q |
150 |
gtgtgaaggcaaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaact |
249 |
Q |
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| T |
4623201 |
gtgtgaaggcaaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaact |
4623102 |
T |
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| Q |
250 |
ttgttgattatgagaat |
266 |
Q |
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| T |
4623101 |
ttgttgattatgagaat |
4623085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 162 - 266
Target Start/End: Complemental strand, 4598673 - 4598569
Alignment:
| Q |
162 |
ggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaactttgttgattatg |
261 |
Q |
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| T |
4598673 |
ggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttgaatggagtgacggatacaccgtgcgttttggaattaactttgttgattatg |
4598574 |
T |
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| Q |
262 |
agaat |
266 |
Q |
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||||| |
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| T |
4598573 |
agaat |
4598569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 4623339 - 4623257
Alignment:
| Q |
20 |
atctatattatcttttatctgcaatgaggtagcaccctctatttacttaaatcagaatcaattatattatttctgcactctaa |
102 |
Q |
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| T |
4623339 |
atctatattatcttttatctgcaatgaggtagcaccctctatttacttaaatcagaatcaattatattattttcgcactctaa |
4623257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 25015913 - 25015853
Alignment:
| Q |
155 |
aaggcaaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatgg |
215 |
Q |
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| T |
25015913 |
aaggcatggtgtgaaagtacaaggatattttgcatggtcacttttggacaactttgaatgg |
25015853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 259
Target Start/End: Complemental strand, 25037193 - 25037089
Alignment:
| Q |
155 |
aaggcaaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaactttgtt |
254 |
Q |
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| T |
25037193 |
aaggcatggtgtgaaagtacaaggatattttgcatggtcacttttagacaactttgaatggctggccggatacagaagacgttttggaattaactttgta |
25037094 |
T |
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| Q |
255 |
gatta |
259 |
Q |
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| T |
25037093 |
gatta |
25037089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 18805793 - 18805901
Alignment:
| Q |
150 |
gtgtgaaggcaaggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaact |
249 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||| | |||||||||||||||| |
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| T |
18805793 |
gtgtgaaggcaaggtgtgaatgtacaaggatattttgcatggtcccttttcgacaattttgaatggcaagacggatacaccttacgttttggaattaact |
18805892 |
T |
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| Q |
250 |
ttgttgatt |
258 |
Q |
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| T |
18805893 |
ttgttgatt |
18805901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 18805680 - 18805725
Alignment:
| Q |
36 |
atctgcaatgaggtagcaccctctatttacttaaatcagaatcaat |
81 |
Q |
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| T |
18805680 |
atctgcaatcaggtagcaccctctctttacttaaataagaatcaat |
18805725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 30363051 - 30363135
Alignment:
| Q |
175 |
aaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaactttgttgatta |
259 |
Q |
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| T |
30363051 |
aaggatattttgcgtggtcgctattggacaattttgaatggggtgaagggtacacagtgaggtttggaatgaactttgtagatta |
30363135 |
T |
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