View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_114 (Length: 261)
Name: NF19103_low_114
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_114 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 9966393 - 9966619
Alignment:
| Q |
17 |
atcccaaactccaccgttcatctttcttataccatgcatgaaataatacacatataaacacaaatcttaaacacaccatttccacaaaactaccaaaatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9966393 |
atcccaaactccaccgttcatctttcttataccatgcatgaaataatacacatataaacacaaatcttaaacataccatttccacaaaactaccaaaatg |
9966492 |
T |
|
| Q |
117 |
gccactgttagaaaacttatagtagaagtaatagatgcacaaaacctagctcccaaggacggtcatggaacttcaagtccatacatagtaattgatttcc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
9966493 |
gccactgttagaaaacttatagtagaagtaatagatgcacaaaacctagctcccaaggacggtcatggaacttcaagtctgtacatagtagttgatttct |
9966592 |
T |
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| Q |
217 |
acggtcaaagaagaaaaactcgaacct |
243 |
Q |
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||||||||||||||||||||||||||| |
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| T |
9966593 |
acggtcaaagaagaaaaactcgaacct |
9966619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 9936229 - 9936450
Alignment:
| Q |
17 |
atcccaaactccaccgttcatctttcttataccatgcatgaaataatacacatataaacacaaatcttaaacacaccatttccacaaaactaccaaaatg |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
9936229 |
atcccaaactccaccgtt-----ttcttataccatgcatgaaataatacacatataaacacaaaccttaaacacaccatttccacaaaactaccaaaatg |
9936323 |
T |
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| Q |
117 |
gccactgttagaaaacttatagtagaagtaatagatgcacaaaacctagctcccaaggacggtcatggaacttcaagtccatacatagtaattgatttcc |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9936324 |
gccactgttagaaaacttatagtagaagtaatagatgcacaaaacctagctcccaaggacggtcatggaacttcaagtccatacatagtaattgatttcc |
9936423 |
T |
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| Q |
217 |
acggtcaaagaagaaaaactcgaacct |
243 |
Q |
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||||||||||||||||||||||||||| |
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| T |
9936424 |
acggtcaaagaagaaaaactcgaacct |
9936450 |
T |
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