View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_123 (Length: 253)
Name: NF19103_low_123
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_123 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 61 - 247
Target Start/End: Original strand, 24621223 - 24621405
Alignment:
| Q |
61 |
gtaatctacattcaacaaa-gcatggttgttttgcaccattctagcttatttccatatatcttacacagggagagtgtgactccttgttgttctgcaggt |
159 |
Q |
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| T |
24621223 |
gtaatctacattcaacaaaagcatggttgttttgcaccattctagcttatttccatatatcttacacaaggagagtgtgactccttgttgttctgcaggt |
24621322 |
T |
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| Q |
160 |
tacaataccatatcatatcatcattaggaatgcaacgaaaccagaccaaaccaaaccaaccattgtcttaggataacatcaatgcttc |
247 |
Q |
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| T |
24621323 |
tacaatac-----catatcatcattaggaatgcaacgaaaccagaccaaaccaaaccaaccattgtcttaggataacatcaatgcttc |
24621405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 47569747 - 47569680
Alignment:
| Q |
61 |
gtaatctacattcaacaaa-gcatggttgttttgcaccattctagcttatttccatatatcttacaca |
127 |
Q |
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| T |
47569747 |
gtaatctacattccacaaaagcatggttcttttgcaccaccctagcttattttcatatatcttacaca |
47569680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 47569609 - 47569568
Alignment:
| Q |
206 |
caaaccaaaccaaccattgtcttaggataacatcaatgcttc |
247 |
Q |
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| T |
47569609 |
caaaccaaaccaaccattgtctttggataacgtcaatgcttc |
47569568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 8332023 - 8331955
Alignment:
| Q |
82 |
atggttgttttgcaccattctagcttatttccatatatcttacacagggagagtgtgactccttgttgttct |
153 |
Q |
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| T |
8332023 |
atggttcttttgcaccatcctagcttattttcatatatcttacata---agagtgtgcctccttattgttct |
8331955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 16375802 - 16375735
Alignment:
| Q |
61 |
gtaatctacattcaacaaa-gcatggttgttttgcaccattctagcttatttccatatatcttacaca |
127 |
Q |
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| T |
16375802 |
gtaatctacataccacaaaagcatggttcttttgtaccatcctaacgtatttccatatatcttacaca |
16375735 |
T |
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