View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_126 (Length: 251)
Name: NF19103_low_126
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_126 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 25497892 - 25498116
Alignment:
| Q |
9 |
attattcttgatttgtcatattttttatggaatccttttttgtcatttccatcgtactttttcttcataattaaaaatgtttctcaatttctcatcttca |
108 |
Q |
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| T |
25497892 |
attattcttgatttgtcatattttttatggaatccttttttgtcatttccatcgtactttt-cttcataattaaaaatgtttctcaatttctcatcttca |
25497990 |
T |
|
| Q |
109 |
atcataaaaactaagggcgaatccaacaaatttaagtagtgaggacaatatatatttgtagcattacatattaaatataaattcagtctccaatttaatc |
208 |
Q |
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| T |
25497991 |
atcataaa--ctaagggcgaatccaacaaatttaagtagtgaggacaatatatatttgtagcattacatattaaatataaatacagtctccaatttaatc |
25498088 |
T |
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| Q |
209 |
tttaaattacataaatataataaatagt |
236 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
25498089 |
tttaaattacataaatataataaatagt |
25498116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 30253941 - 30253904
Alignment:
| Q |
199 |
caatttaatctttaaattacataaatataataaatagt |
236 |
Q |
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| T |
30253941 |
caatttaatctttaaactacataaatataataaatagt |
30253904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 879787 - 879823
Alignment:
| Q |
195 |
tctccaatttaatctttaaattacataaatataataa |
231 |
Q |
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| T |
879787 |
tctccaatttaatccttaaattatataaatataataa |
879823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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