View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_128 (Length: 250)
Name: NF19103_low_128
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_128 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 7422897 - 7423133
Alignment:
| Q |
14 |
aaatccatgcaacaaattagccaaacttgattgtatcaccttaagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactca |
113 |
Q |
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| T |
7422897 |
aaatccatgcaacaaattagccaaacttgattgtatcaccttaagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactca |
7422996 |
T |
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| Q |
114 |
taatcatgtccttttacatctatattattaccaataaacctctctggtataaactcatatggattgtcccaaacattaggatctcttccaattgtccaag |
213 |
Q |
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| T |
7422997 |
taatcatgtccttttacatctatattattaccaataaacctctcaggtataaactcatatggattgtcccaaacattaggatctcttccaattgtccaag |
7423096 |
T |
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| Q |
214 |
tattgacaagaattagagtcccttttgggatatcata |
250 |
Q |
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| T |
7423097 |
tattgacaagaattagagtcccttttgggatatcata |
7423133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 7415238 - 7415471
Alignment:
| Q |
14 |
aaatccatgcaacaaattagccaaacttgattgtatcaccttaagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactca |
113 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
7415238 |
aaatccatgcaacaaattagccaaacttgtttgaatcaccttaataccaagagggtaaccaggacacatccttctaccagcaccaaatggtaacaactca |
7415337 |
T |
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| Q |
114 |
taatcatgtccttttacatctatattattaccaataaacctctctggtataaactcatatggattgtcccaaacattaggatctcttccaattgtccaag |
213 |
Q |
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| T |
7415338 |
aaatcatgtccttttacatctatatctttaccaagaaacctctcaggcataaattcatatggattctcccaaacctcagaatctcttgcaattgtccaag |
7415437 |
T |
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| Q |
214 |
tattgacaagaattagagtcccttttgggatatc |
247 |
Q |
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| T |
7415438 |
tattgacaagaactatagtccctttgggaatatc |
7415471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 7429303 - 7429542
Alignment:
| Q |
14 |
aaatccatgcaacaaattagccaaacttgattgtatcaccttaagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactca |
113 |
Q |
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||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || | |
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| T |
7429303 |
aaatccatgcaacaagttagccaaacttgattgaaccaccttaagaccaagaggataaccaggacacatccttctaccagcacctaatggcaacatctta |
7429402 |
T |
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| Q |
114 |
taatcatgtcctt---ttacatctatattattaccaataaacctctctggtataaactcatatggattgtcccaaacattaggatctcttccaattgtcc |
210 |
Q |
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| T |
7429403 |
taatcatgtccttttattatatctatatcattgttaataaacctctctggtataaattcatatggattatcccaactatcagaatctcttccaattgtcc |
7429502 |
T |
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| Q |
211 |
aagtattgacaagaattagagtcccttttgggatatcata |
250 |
Q |
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| T |
7429503 |
aagtattgacaagaatcatagtcccttttggtatatcata |
7429542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 19836 - 19799
Alignment:
| Q |
147 |
ataaacctctctggtataaactcatatggattgtccca |
184 |
Q |
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| T |
19836 |
ataaacctctctggtttaaactcatatggattctccca |
19799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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