View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_130 (Length: 250)
Name: NF19103_low_130
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_130 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 52873594 - 52873709
Alignment:
| Q |
16 |
catttcactcaaacgtatttcatttcgcatattatattgtccatctcagcaccaaatcatatttatcctcattttcatgccctcgttttcttccaaacta |
115 |
Q |
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| T |
52873594 |
catttcactcaaacgtatttcatttcgcatattatattgtccatctcagcaccaaatcatatttatcctcattttcatgccctcgttttcttccaaacta |
52873693 |
T |
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| Q |
116 |
ttaattctccatgtta |
131 |
Q |
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| T |
52873694 |
ttaattctccatgtta |
52873709 |
T |
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Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 52873752 - 52873823
Alignment:
| Q |
127 |
tgttagcatttctatttgctaattggaaagtaccttacattccatgcaatttgacttgttatatatatgttc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52873752 |
tgttagcatttctatttgctaattggaaagtaccttacattccatgcaatttgacttgttatatatatgttc |
52873823 |
T |
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