View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_133 (Length: 250)

Name: NF19103_low_133
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_133
NF19103_low_133
[»] chr3 (2 HSPs)
chr3 (13-250)||(11645837-11646074)
chr3 (11-250)||(21389280-21389519)
[»] chr7 (3 HSPs)
chr7 (13-250)||(14972083-14972320)
chr7 (13-250)||(15401559-15401796)
chr7 (30-121)||(9688249-9688340)
[»] chr2 (1 HSPs)
chr2 (32-250)||(19391880-19392095)
[»] chr4 (2 HSPs)
chr4 (36-242)||(28801727-28801933)
chr4 (30-121)||(13554626-13554717)
[»] chr6 (4 HSPs)
chr6 (19-132)||(24000145-24000258)
chr6 (19-132)||(23998781-23998894)
chr6 (19-132)||(23999463-23999576)
chr6 (19-119)||(23986557-23986657)
[»] chr5 (1 HSPs)
chr5 (30-244)||(20065184-20065398)
[»] chr1 (1 HSPs)
chr1 (30-250)||(18578537-18578757)
[»] chr8 (1 HSPs)
chr8 (32-199)||(14757464-14757631)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 11646074 - 11645837
Alignment:
Q  13 aatatataagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||    
T  11646074 aatatataagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctatggaccatgagaaaagactcagatggaagaggttttg 11645975  T
Q  113 taaaaatgtcatcaagttgacttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaatg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11645974 taaaaatgtcatcaagttgacttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaatg 11645875  T
Q  213 tttagttcttgaatgtaagactgggtttttggtaagat 250  Q
    |||||| |||||||||||||||||||||||||||||||    
T  11645874 tttagtccttgaatgtaagactgggtttttggtaagat 11645837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 21389519 - 21389280
Alignment:
Q  11 agaatatataagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttt 110  Q
    |||||| |||| ||||| ||||||||||||||| ||||||||||||||||||||||| || |||||||||  ||||||||||||||||||| || |||||    
T  21389519 agaataaataaaaagaagctcttgcttatttaaagcaagaggtatccaagatacctaatttcctacggattttgagaaaagactcggatggtagtggttt 21389420  T
Q  111 tgtaaaaatgtcatcaagttgacttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaa 210  Q
    |||||||| |||| |||| ||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||  |||| ||||| | |||| ||  |    
T  21389419 tgtaaaaaagtcagcaagctgacttttagtgtcaacgtactcgaacgttacatccttcttttcaacatgatccctgaggaagtgatgtcaaatctcagta 21389320  T
Q  211 tgtttagttcttgaatgtaagactgggtttttggtaagat 250  Q
    || |||||  |||||||||| ||||| |||||||| ||||    
T  21389319 tgcttagtctttgaatgtaacactggatttttggtgagat 21389280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 14972083 - 14972320
Alignment:
Q  13 aatatataagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttg 112  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || |||||||    
T  14972083 aataaataagaagaaactcttgcttatttaaggaaagaggtatccaagatacctagttccctacggatcttgagaaaagacttggatggtagtggttttg 14972182  T
Q  113 taaaaatgtcatcaagttgacttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaatg 212  Q
    | ||||| ||  |||| |||| |||| ||||||||||| | || ||||||||||||||||||||||| |  ||| |||||||||| || ||| ||| ||     
T  14972183 tgaaaatatcggcaagctgacctttagtgtcaacatactcgaaagttacatccttcttttcaacatggtttctaaggaaatgatgtcgtatctcaatata 14972282  T
Q  213 tttagttcttgaatgtaagactgggtttttggtaagat 250  Q
    |||||| ||||||||||||||| | |||||||| ||||    
T  14972283 tttagtccttgaatgtaagactagttttttggtgagat 14972320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 15401559 - 15401796
Alignment:
Q  13 aatatataagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttg 112  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || |||||||    
T  15401559 aataaataagaagaaactcttgcttatttaaggaaagaggtatccaagatacctagttccctacggatcttgagaaaagacttggatggtagtggttttg 15401658  T
Q  113 taaaaatgtcatcaagttgacttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaatg 212  Q
    | ||||| ||  |||| |||| |||| ||||||||||| | || ||||||||||||||||||||||| |  ||| |||||||||| || ||| ||| ||     
T  15401659 tgaaaatatcggcaagctgacctttagtgtcaacatactcgaaagttacatccttcttttcaacatggtttctaaggaaatgatgtcgtatctcaatata 15401758  T
Q  213 tttagttcttgaatgtaagactgggtttttggtaagat 250  Q
    |||||| ||||||||||||||| | |||||||| ||||    
T  15401759 tttagtccttgaatgtaagactagttttttggtgagat 15401796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 9688340 - 9688249
Alignment:
Q  30 tcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaatgt 121  Q
    |||| ||||||||| |||||||||||| | ||||||||  |||||||  ||  |||||||| | |||||||| || ||||||||||||||||    
T  9688340 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaataatcggatggtagtggttttgtaaaaatgt 9688249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 32 - 250
Target Start/End: Original strand, 19391880 - 19392095
Alignment:
Q  32 ttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaatgtcatcaagttg 131  Q
    |||||||||||| |||||||||||| |||||||||||| |||||| |||| |||| ||||| |||||||| || |||||| ||||||||||| |||| ||    
T  19391880 ttgcttatttaaagcaagaggtatctaagatacctagt-ccctacagatcttgaggaaagaatcggatggtagcggttttataaaaatgtcagcaagatg 19391978  T
Q  132 acttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaatgtttagttcttgaatgtaag 231  Q
    ||  ||| ||||||||||| ||||  ||||||||||||| |||||  |||||||| |||||| |||||||||| |||  ||||||||||||||||||||     
T  19391979 acacttagtgtcaacatactcaaaaattacatccttcttatcaac--gatccctaaggaaattatgccgaatctcaatgtgtttagttcttgaatgtaaa 19392076  T
Q  232 actgggtttttggtaagat 250  Q
    |||||||||||||||||||    
T  19392077 actgggtttttggtaagat 19392095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 36 - 242
Target Start/End: Original strand, 28801727 - 28801933
Alignment:
Q  36 ttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaatgtcatcaagttgactt 135  Q
    |||||||| | |||||||||| | |||||||||||||||||||||| |  |||| || |||||||| |||||||||||| |||||||| |||||||||      
T  28801727 ttatttaaagtaagaggtatctatgatacctagttccctacggatcttacgaaaggagtcggatggtagaggttttgtagaaatgtcagcaagttgacac 28801826  T
Q  136 ttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaatgtttagttcttgaatgtaagactg 235  Q
    ||| ||||||||||| | || || || |||||||||||||||||||||||| |||||||||   ||||  |||  ||||||||||||||||||||| |||    
T  28801827 ttagtgtcaacatactcgaaagtcacgtccttcttttcaacatgatccctaaggaaatgatattgaatttcaatgtgtttagttcttgaatgtaagtctg 28801926  T
Q  236 ggttttt 242  Q
    | |||||    
T  28801927 gattttt 28801933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 13554717 - 13554626
Alignment:
Q  30 tcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaatgt 121  Q
    |||| ||||||||| |||||||||||| | ||||||||  |||||||  ||  |||||||| | |||||||| || ||||||||||||||||    
T  13554717 tctttcttatttaaagcaagaggtatctaggatacctaactccctacatattttgagaaaataatcggatggtagtggttttgtaaaaatgt 13554626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 24000258 - 24000145
Alignment:
Q  19 taagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaa 118  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || |||||||||||||    
T  24000258 taagaagaagctcttgcttatttaaggcaagaggtatccaagatacctagttccctacagatcttgagaaaagactcggatggtaggggttttgtaaaaa 24000159  T
Q  119 tgtcatcaagttga 132  Q
    | ||| ||||||||    
T  24000158 tatcagcaagttga 24000145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 23998894 - 23998781
Alignment:
Q  19 taagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaa 118  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || |||||||||||||    
T  23998894 taagaagaagcacttgcttatttaaggcaagaggtatccaagatacctagttccctacagatcttgagaaaagactcggatggtaggggttttgtaaaaa 23998795  T
Q  119 tgtcatcaagttga 132  Q
    | ||| ||||||||    
T  23998794 tatcagcaagttga 23998781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 23999576 - 23999463
Alignment:
Q  19 taagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaa 118  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||  ||||||||||||    
T  23999576 taagaagaagctcttgcttatttaaggcaagaggtatccaagatacctagttccctacagatcttgagaaaagactcggatggtaggagttttgtaaaaa 23999477  T
Q  119 tgtcatcaagttga 132  Q
    | ||| ||||||||    
T  23999476 tatcagcaagttga 23999463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 23986657 - 23986557
Alignment:
Q  19 taagaagaaactcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaa 118  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || |||||||||||||    
T  23986657 taagaagaagctcttgcttatttaaggcaagaggtatccaagatacctagttccctacagatcttgagaaaagactcggatggtaggggttttgtaaaaa 23986558  T
Q  119 t 119  Q
    |    
T  23986557 t 23986557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 20065184 - 20065398
Alignment:
Q  30 tcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaatgtcatcaagt 129  Q
    |||||||||||||| || ||| ||||| ||||||  | |||||||| | ||| |||| ||||| |||||||| |   ||||||||||||||||| |||||    
T  20065184 tcttgcttatttaaagctagatgtatctaagatatatggttccctatgaatcttgaggaaagagtcggatggtatcagttttgtaaaaatgtcagcaagt 20065283  T
Q  130 tgacttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaatgtttagttcttgaatgta 229  Q
    ||||  ||  |||||||||   |||| | |||||||||||||||||||| ||||||| |||||||||  |||||| ||| ||||||||||||||||| ||    
T  20065284 tgacactttgtgtcaacatgatcaaaaggtacatccttcttttcaacataatccctaaggaaatgatatcgaatctcaatatgtttagttcttgaatata 20065383  T
Q  230 agactgggtttttgg 244  Q
    | | |||||||||||    
T  20065384 aaattgggtttttgg 20065398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 18578537 - 18578757
Alignment:
Q  30 tcttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaatgtcatcaagt 129  Q
    |||||||| || || ||||| |||||| ||||||| |||||||||||  ||| | || ||||| || ||||| | ||||| ||||||| ||||| |||||    
T  18578537 tcttgctttttgaaagcaagtggtatctaagatacttagttccctacatatctttaggaaagagtcagatggtaaaggttatgtaaaactgtcagcaagt 18578636  T
Q  130 tgacttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgccgaatcacaaaatgtttagttcttgaatgta 229  Q
    ||||  ||| |||||| |||  |||| || || || ||||||||||||  |||| || |||||||||||| |||| |||  |||||||||||||||||||    
T  18578637 tgacacttagtgtcaaaatattcaaaagtcacgtcattcttttcaacaccatccataaggaaatgatgccaaatctcaatgtgtttagttcttgaatgta 18578736  T
Q  230 agactgggtttttggtaagat 250  Q
    | ||| |||||||||| ||||    
T  18578737 aaactaggtttttggtgagat 18578757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 14757464 - 14757631
Alignment:
Q  32 ttgcttatttaaggcaagaggtatccaagatacctagttccctacggatcatgagaaaagactcggatggaagaggttttgtaaaaatgtcatcaagttg 131  Q
    |||||||||||| ||||| |||||||| |||||||||||| ||||||||  | |||||||| ||||||||||| |||||  ||||||| |   |||||||    
T  14757464 ttgcttatttaaagcaagtggtatccatgatacctagttcgctacggattttaagaaaagagtcggatggaagtggtttgctaaaaatatttgcaagttg 14757563  T
Q  132 acttttaatgtcaacatacgcaaacgttacatccttcttttcaacatgatccctacggaaatgatgcc 199  Q
    || |||  |||||| |||| ||||  ||||||| |||||||| || ||| |||||   ||||||||||    
T  14757564 acatttggtgtcaatatactcaaaaattacatcattcttttctacgtgaaccctaaaaaaatgatgcc 14757631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University