View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_138 (Length: 247)
Name: NF19103_low_138
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_138 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 8870409 - 8870171
Alignment:
| Q |
1 |
tgttaaaatctctgtctgtgatcttgtgtttctgtccttctggagagactctcttctacaatcttcagcacttaccatataattaagagcatccactgct |
100 |
Q |
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| T |
8870409 |
tgttaaaatctctgtctgtgatcttgtgtttctgtccttctggagagactctcttctacaatcttcagcacttgccatataattaagagcatccactgct |
8870310 |
T |
|
| Q |
101 |
tgttgtccatcacctacagcaacaacaacagctcccattttttcaagcattattgttgcaaccctttgaattactggtgtatcttctgcaagcaaaatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8870309 |
tgttgtccatcacctacagcaacaacaacagctcccattttttcaagcattattgttgcaaccctttgaattactggtgtatcttctgcaagcaaaatcc |
8870210 |
T |
|
| Q |
201 |
ttaacccctcaagtgatttcttatcattcacttcatttc |
239 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
8870209 |
ttaacccctcaagtgatttcttatcattcacttcttttc |
8870171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 31858935 - 31859071
Alignment:
| Q |
86 |
agagcatccactgcttgttgtccatcacctacagcaacaacaacagctcccattttttcaagcattattgttgcaaccctttgaattactggtgtatctt |
185 |
Q |
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||||||||||| || |||||||| || |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
31858935 |
agagcatccaccgcctgttgtccgtcgcctacagcaacaacggtggctcccattttttcaagcattatggttgccaccctttgaattactgctgtatctt |
31859034 |
T |
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| Q |
186 |
ctgcaagcaaaatccttaacccctcaagtgatttctt |
222 |
Q |
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| T |
31859035 |
ctgcaagcaatatcctcaaaccttcaagagacttctt |
31859071 |
T |
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