View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_139 (Length: 246)
Name: NF19103_low_139
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_139 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 48904014 - 48903807
Alignment:
| Q |
19 |
aataagaacctaggtaacatgcatgggataggctggagaggaagcacgatggctggtctagacattcaagtgcgtaggcattgaattaaggaaccaaatg |
118 |
Q |
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| T |
48904014 |
aatatgaacctaggtaa----catgggataggctggagaggaagcacgatggctggtctagacattcaagtgcgtaggcattgaattaaggaaccaaatg |
48903919 |
T |
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| Q |
119 |
tagtttgttactagactaacatgcggatgaatagaacatgcaaagttattaaattaaaaatgttaaagagttaatatttgaaagtgtataatagttactt |
218 |
Q |
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| T |
48903918 |
tagtttgttactagactaacatgcggatgaatagaacatacaaagttattaaattaaaaatgttaaagagttaatatttgaaagtgtataatagttacta |
48903819 |
T |
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| Q |
219 |
tgaggttctttt |
230 |
Q |
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|||||||||||| |
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| T |
48903818 |
tgaggttctttt |
48903807 |
T |
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Back To:
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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 9122068 - 9122147
Alignment:
| Q |
49 |
ggctggagaggaagcacgatggctggtctagacattcaagtgcgtaggcattgaattaaggaaccaaatgtagtttgtta |
128 |
Q |
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||||||||| |||||| |||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |
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| T |
9122068 |
ggctggagaagaagcatgatggctggtctagacattcaagtgcttcggagttgaattaaggaaccaaatgtagtttgtta |
9122147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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