View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_147 (Length: 241)

Name: NF19103_low_147
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_147
NF19103_low_147
[»] chr3 (2 HSPs)
chr3 (14-225)||(11643258-11643469)
chr3 (11-226)||(21388744-21388959)
[»] chr7 (2 HSPs)
chr7 (17-213)||(14972702-14972903)
chr7 (17-213)||(15402178-15402379)
[»] chr6 (1 HSPs)
chr6 (17-219)||(15969162-15969364)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 11643469 - 11643258
Alignment:
Q  14 agacaaacactaaacataatgtcggatctacttgcggttaaataaagcaaggagctgatcatacctcggtatttcttaccatctactgcaatgtcggatt 113  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||    
T  11643469 agacaaacactaaacataatgtcgggtctacttgcggttaaataaagcaaggagccgatcatacctcggtatttcttaccatctacctcaatgtcggatt 11643370  T
Q  114 catccttctcaattgatagtgatgaagccataggagttccgatggacttataatcttgcatgtcgaacttcttgagtagttctagtgcatactatgtttg 213  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11643369 catccttctcaattgatagtgttgaagccataggagttccgatggacatataatcttgcatgtcgaacttcttgagtagttctagtgcatactttgtttg 11643270  T
Q  214 ccttattaagat 225  Q
    | ||||||||||    
T  11643269 cattattaagat 11643258  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 21388959 - 21388744
Alignment:
Q  11 cacagacaaacactaaacataatgtcggatctacttgcggttaaataaagcaaggagctgatcatacctcggtatttcttaccatctactgcaatgtcgg 110  Q
    |||| |||||||||||||||||| |||| || ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||   | |||||||    
T  21388959 cacatacaaacactaaacataatatcgggtcgacttgcggttaaataaagcaaagagccgatcatacctcggtatttcttgccatctatctcgatgtcgg 21388860  T
Q  111 attcatccttctcaattgatagtgatgaagccataggagttccgatggacttataatcttgcatgtcgaacttcttgagtagttctagtgcatactatgt 210  Q
    | ||||| ||  |||| |||||||  ||  |||||||||||  ||| |||||  |||||||||| || |||||||| ||||| || || |||||   |||    
T  21388859 actcatctttgccaatggatagtgcggattccataggagttgagattgacttgcaatcttgcatatcaaacttctttagtagctcgagggcatatattgt 21388760  T
Q  211 ttgccttattaagatt 226  Q
    ||| ||||| ||||||    
T  21388759 ttgacttataaagatt 21388744  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 14972702 - 14972903
Alignment:
Q  17 caaacactaaacataatgtcggatctacttgcggttaaataaagcaagga-----gctgatcatacctcggtatttcttaccatctactgcaatgtcgga 111  Q
    ||||||||||||||||||| ||  |||||||||||||||||||| || ||     |  |||||||||||||||||||||||| |||||  ||||||| ||    
T  14972702 caaacactaaacataatgttgggcctacttgcggttaaataaagaaaagaaaagagtcgatcatacctcggtatttcttaccgtctacctcaatgtcaga 14972801  T
Q  112 ttcatccttctcaattgatagtgatgaagccataggagttccgatggacttataatcttgcatgtcgaacttcttgagtagttctagtgcatactatgtt 211  Q
    |||||| || ||||| |||| |  |||||| |||||||||   || |||||  |||||||||||||||||||||| |||||||| |||||||| | ||||    
T  14972802 ttcatctttgtcaatggataatactgaagctataggagttgtaattgacttgcaatcttgcatgtcgaacttcttaagtagttcaagtgcatattttgtt 14972901  T
Q  212 tg 213  Q
    ||    
T  14972902 tg 14972903  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 15402178 - 15402379
Alignment:
Q  17 caaacactaaacataatgtcggatctacttgcggttaaataaagcaagga-----gctgatcatacctcggtatttcttaccatctactgcaatgtcgga 111  Q
    ||||||||||||||||||| ||  |||||||||||||||||||| || ||     |  |||||||||||||||||||||||| |||||  ||||||| ||    
T  15402178 caaacactaaacataatgttgggcctacttgcggttaaataaagaaaagaaaagagtcgatcatacctcggtatttcttaccgtctacctcaatgtcaga 15402277  T
Q  112 ttcatccttctcaattgatagtgatgaagccataggagttccgatggacttataatcttgcatgtcgaacttcttgagtagttctagtgcatactatgtt 211  Q
    |||||| || ||||| |||| |  |||||| |||||||||   || |||||  |||||||||||||||||||||| |||||||| |||||||| | ||||    
T  15402278 ttcatctttgtcaatggataatactgaagctataggagttgtaattgacttgcaatcttgcatgtcgaacttcttaagtagttcaagtgcatattttgtt 15402377  T
Q  212 tg 213  Q
    ||    
T  15402378 tg 15402379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 15969162 - 15969364
Alignment:
Q  17 caaacactaaacataatgtcggatctacttgcggttaaataaagcaaggagctgatcatacctcggtatttcttaccatctactgcaatgtcggattcat 116  Q
    ||||||||||| ||||| |||| |||||| ||||||||||||||||| |||| |||||||||||||||| |||||||||||||  |||||   |||||||    
T  15969162 caaacactaaatataatttcgggtctactagcggttaaataaagcaaagagccgatcatacctcggtatctcttaccatctacctcaatgcaagattcat 15969261  T
Q  117 ccttctcaattgatagtgatgaagccataggagttccgatggacttataatcttgcatgtcgaacttcttgagtagttctagtgcatactatgtttgcct 216  Q
    | || | ||| |||||||  || |||||||||||   ||| |||||  |||||||||| || || || ||||| ||||||| || ||| | |||||| ||    
T  15969262 ctttgttaatggatagtgcagatgccataggagtggagattgacttgaaatcttgcatatcaaaatttttgagaagttctaatgtatattttgtttgact 15969361  T
Q  217 tat 219  Q
    |||    
T  15969362 tat 15969364  T

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