View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_148 (Length: 240)
Name: NF19103_low_148
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_148 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 12149811 - 12149582
Alignment:
| Q |
1 |
acgaacattgtacacaattgttgtgggcaccggcatgtcccgg-------tgctatatagtttttagttaatgtgttgtgttttatattgcataggtgaa |
93 |
Q |
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| T |
12149811 |
acgaacattggacacaattgttgtgggcaccggcatgtcccggaccccggtgctatatagtttttagttaatgtgttgtgttttgtattgcataggtgaa |
12149712 |
T |
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| Q |
94 |
acaattgttagnnnnnnntgatgaagggcatgttgttgctacttgccgtaatcctgatgcatcaactgggctacttcgtttgaaggatagatttgatgat |
193 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12149711 |
acaattgttagaaaaaaatgatgaagggcatgttgttgctacttgccgtaatcctgatgcatcaactgggctacttcgtttgaaggatagatttgatgat |
12149612 |
T |
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| Q |
194 |
cgacttcaaattttgcctttggatttgact |
223 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12149611 |
cgacttcaaattttgcctttggatttgact |
12149582 |
T |
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