View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_149 (Length: 240)

Name: NF19103_low_149
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_149
NF19103_low_149
[»] chr8 (6 HSPs)
chr8 (1-222)||(10693468-10693689)
chr8 (21-222)||(10707278-10707485)
chr8 (109-222)||(10657453-10657566)
chr8 (94-222)||(10690215-10690343)
chr8 (109-222)||(10698163-10698276)
chr8 (30-222)||(10633796-10633976)
[»] chr2 (2 HSPs)
chr2 (109-222)||(15240493-15240606)
chr2 (139-222)||(15246824-15246907)
[»] chr7 (2 HSPs)
chr7 (24-222)||(33777472-33777673)
chr7 (128-215)||(33774840-33774931)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10693468 - 10693689
Alignment:
Q  1 ctaggttcttgaaaaaggtgtatttaattcaaatctattgaattatttggcaagattggtcgcaaccgccttctaatatttcgacgtggcatgataaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10693468 ctaggttcttgaaaaaggtgtatttaattcaaatctattgaattatttggcaagattggtcgcaaccgccttctaatatttcgacgtggcacgataaaat 10693567  T
Q  101 agggttttatcatgacaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10693568 agggttttatcatgacaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaa 10693667  T
Q  201 agaaactattgaaagggaacca 222  Q
    ||||||||||||||||||||||    
T  10693668 agaaactattgaaagggaacca 10693689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 10707278 - 10707485
Alignment:
Q  21 tatttaattcaaatctattgaattatttggcaagattggtcgcaaccgccttctaatatttcgacgtggcatgataaaatagggttttatc------atg 114  Q
    |||||||||||||||||||||| || |||||||||||| |||||||| |||||| |||||| ||||| ||   |||||| | ||| | |||      |||    
T  10707278 tatttaattcaaatctattgaagtagttggcaagattgatcgcaacctccttctcatatttggacgtagcccaataaaacaaggtctgatcctgatcatg 10707377  T
Q  115 acaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaactattgaaa 214  Q
    |||||||||||| |||||||||||||||| |||||||||| |||||||  | || ||||||| | ||| |||||||||| ||||||||||||||||||||    
T  10707378 acaagtacatgacaaatgaaccatattgtatatatgataaagtatccaagtgtttcccaattttctggaaagaacatcaacaccaaagaaactattgaaa 10707477  T
Q  215 gggaacca 222  Q
    ||||||||    
T  10707478 gggaacca 10707485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 10657453 - 10657566
Alignment:
Q  109 atcatgacaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaacta 208  Q
    ||||||| |||||||||| |||||||||||| |||||| ||| ||||||||||| ||| |||||| |||| ||||| |||||||| ||||||||||| ||    
T  10657453 atcatgataagtacatgacaaatgaaccataatgtgtaaatggtaatgtatccaaataatccccatttgtttgggatgaacatcaacaccaaagaaatta 10657552  T
Q  209 ttgaaagggaacca 222  Q
    ||||||| ||||||    
T  10657553 ttgaaagtgaacca 10657566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 10690215 - 10690343
Alignment:
Q  94 ataaaatagggttttatcatgacaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatca 193  Q
    ||||||||| || | |||||||  ||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||| | |||||  |||||||    
T  10690215 ataaaatagagtctaatcatgattagtacatgaaaaatgaaccatattgtgtatatgataatatatccaaataatccccaattttctgggagcaacatca 10690314  T
Q  194 tcaccaaagaaactattgaaagggaacca 222  Q
     |||||| |||| || |||||| ||||||    
T  10690315 acaccaatgaaattaatgaaagtgaacca 10690343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 10698163 - 10698276
Alignment:
Q  109 atcatgacaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaacta 208  Q
    ||||||||||  | |||| |||||||||||| |||||||||  ||||||||||| ||| ||| ||||| | ||| |||||||||| ||||||||||| ||    
T  10698163 atcatgacaaagatatgagaaatgaaccataatgtgtatattgtaatgtatccaaatagtccacaattttctggaaagaacatcaacaccaaagaaatta 10698262  T
Q  209 ttgaaagggaacca 222  Q
    ||||||||||||||    
T  10698263 ttgaaagggaacca 10698276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 10633796 - 10633976
Alignment:
Q  30 caaatctattgaattatttggcaagattggtcgcaaccgccttctaatatttcgacgtggcatgataaaatagggttttatcatgacaagtacatgataa 129  Q
    ||||||||||||| |||||||||||||||||||||||  ||||||||||| | ||||| ||   ||||            |||| |||| |||||||  |    
T  10633796 caaatctattgaagtatttggcaagattggtcgcaacttccttctaatatgtggacgtagcccaataa------------tcattacaaatacatgacta 10633883  T
Q  130 atgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaactattgaaagggaacca 222  Q
    ||||||||| |||||||||||| ||||||||||  || ||||||| | |  || |||||||||||||||||||||| |||||| || ||||||    
T  10633884 atgaaccatgttgtgtatatgacaatgtatccaactactccccaacttttaggaaagaacatcatcaccaaagaaattattgagagcgaacca 10633976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 15240606 - 15240493
Alignment:
Q  109 atcatgacaagtacatgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaacta 208  Q
    |||| ||| |||| || |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||  |||||||||| ||    
T  15240606 atcaagactagtagataataaatgaaccataatgtgtatatgataatgtatccaaataatccccaattgtgtgggaagaacatcaaaaccaaagaaatta 15240507  T
Q  209 ttgaaagggaacca 222  Q
    ||||||||||||||    
T  15240506 ttgaaagggaacca 15240493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 15246907 - 15246824
Alignment:
Q  139 attgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaactattgaaagggaacca 222  Q
    |||||| ||||||||||||||||| ||| ||||||||| | |||||||||||||| ||||||||||| ||||||||| ||||||    
T  15246907 attgtgcatatgataatgtatccagataatccccaattctttgggaagaacatcaacaccaaagaaattattgaaagcgaacca 15246824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 33777673 - 33777472
Alignment:
Q  24 ttaattcaaatctattgaattatttggcaagattggtcgcaaccgccttctaatatttcgacgtggcatgataaaatagggttttatcatgacaagta-- 121  Q
    ||||||||||||||||||| ||||||||| || ||||||||||  |||||| || | | |||||  |   | |||| || || |  |||||| |||||      
T  33777673 ttaattcaaatctattgaagtatttggcaggagtggtcgcaacttccttctcatttgtggacgtaccccaacaaaacagtgtctgttcatgagaagtagc 33777574  T
Q  122 -catgataaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaacatcatcaccaaagaaactattgaaagggaac 220  Q
     ||| | |||||||||||  |||||||||||||||||||  ||||| ||||||||||| ||| | |||||| | ||||||||||||||||||||| ||||    
T  33777573 acataacaaatgaaccatgctgtgtatatgataatgtatgaacatactccccaattgtttggaaggaacattaacaccaaagaaactattgaaagtgaac 33777474  T
Q  221 ca 222  Q
    ||    
T  33777473 ca 33777472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 33774931 - 33774840
Alignment:
Q  128 aaatgaaccatattgtgtatatgataatgtatccacatattccccaattgtgtgggaagaac----atcatcaccaaagaaactattgaaag 215  Q
    ||||||||||||| ||||||||||||||||||||  ||| |  |||||||| ||||| ||||    |||| |||||||||||||||||||||    
T  33774931 aaatgaaccatatcgtgtatatgataatgtatcctgataatgtccaattgtttgggaggaacatcgatcaacaccaaagaaactattgaaag 33774840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University