View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_150 (Length: 240)
Name: NF19103_low_150
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_150 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 24621796 - 24621907
Alignment:
| Q |
110 |
ataggcttggtttacaagtctttctttggagagcctgaatatgattgagttataacaagacgtgagataaacacaagtatcttctggttccctttcaatc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24621796 |
ataggcttggtttacaagtctttctttggagagcctgaatatgattgagttataacaagacgtgagataaacacaagtatcttctggttccctttcaatc |
24621895 |
T |
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| Q |
210 |
agcagtgcctgt |
221 |
Q |
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|||||||||||| |
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| T |
24621896 |
agcagtgcctgt |
24621907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 23787071 - 23786960
Alignment:
| Q |
110 |
ataggcttggtttacaagtctttctttggagagcctgaatatgattgagttataacaagacgtgagataaacacaagtatcttctggttccctttcaatc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23787071 |
ataggcttggtttacaagtctttctttggagagcctgaatatgattgagttataacaagacgtgagagaaacacaagtatcttctggttccctttcaatc |
23786972 |
T |
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| Q |
210 |
agcagtgcctgt |
221 |
Q |
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|||||||||||| |
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| T |
23786971 |
agcagtgcctgt |
23786960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 23787194 - 23787102
Alignment:
| Q |
19 |
caattctttaagcaattcaatagctagtttaaagcggccgatgatgcaataaccatagattagatttgcatatgttctagggttaagcaagat |
111 |
Q |
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| T |
23787194 |
caattctttaagcaattcaacagctagtttaaagtgaccgatgatgcaataaccatagattagatttgcatatgttatagggttaagcaagat |
23787102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 24621681 - 24621765
Alignment:
| Q |
19 |
caattctttaagcaattcaatagctagtttaaagcggccgatgatgcaataaccatagattagatttgcatatgttctagggttaagcaagat |
111 |
Q |
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| T |
24621681 |
caattctttaagcaattcaatagctagtttaaagtgaccgatga--------ccatagattagatttgcatatgttctagggttaagcaagat |
24621765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 4251615 - 4251663
Alignment:
| Q |
107 |
aagataggcttggtttacaagtctttctttggagagcctgaatatgatt |
155 |
Q |
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|||||||||||||||||||||||| |||||| |||||||| |||||||| |
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| T |
4251615 |
aagataggcttggtttacaagtctatctttgcagagcctggatatgatt |
4251663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 28239100 - 28239044
Alignment:
| Q |
110 |
ataggcttggtttacaagtctttctttggagagcctgaatatgattgagttataaca |
166 |
Q |
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||||||||||||||||||||| |||||| |||||||| |||||||| | |||||||| |
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| T |
28239100 |
ataggcttggtttacaagtctatctttgcagagcctgtatatgatttaattataaca |
28239044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 28231527 - 28231471
Alignment:
| Q |
110 |
ataggcttggtttacaagtctttctttggagagcctgaatatgattgagttataaca |
166 |
Q |
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|||||||||||| |||||||| |||||| |||| |||||||| ||||| |||||||| |
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| T |
28231527 |
ataggcttggttaacaagtctatctttgcagagtctgaatataattgaattataaca |
28231471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 47569190 - 47569148
Alignment:
| Q |
110 |
ataggcttggtttacaagtctttctttggagagcctgaatatg |
152 |
Q |
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||||||||||||||||||||| |||||| |||| ||||||||| |
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| T |
47569190 |
ataggcttggtttacaagtctatctttgcagagtctgaatatg |
47569148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 671046 - 671091
Alignment:
| Q |
110 |
ataggcttggtttacaagtctttctttggagagcctgaatatgatt |
155 |
Q |
| |
|
|||| |||||||||||||||| |||||| | ||||||||||||||| |
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| T |
671046 |
atagccttggtttacaagtctatctttgcacagcctgaatatgatt |
671091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 6326807 - 6326860
Alignment:
| Q |
110 |
ataggcttggtttacaagtctttctttggagagcctgaatatgattgagttata |
163 |
Q |
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||||||||||||| ||||||| |||||| |||| |||| |||||| |||||||| |
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| T |
6326807 |
ataggcttggtttgcaagtctatctttgcagagtctgagtatgatcgagttata |
6326860 |
T |
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