View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_153 (Length: 239)
Name: NF19103_low_153
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_153 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7423242 - 7423465
Alignment:
| Q |
1 |
aatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcggagatt |
100 |
Q |
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| T |
7423242 |
aatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcggagatt |
7423341 |
T |
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| Q |
101 |
gcccattcaactgtaactgtagatgtatctgtcccacctgctattaagtcctacgaaattgatatataacatatgatattggtatagtcttgtttagata |
200 |
Q |
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| T |
7423342 |
gcccattctactgttactgtagatgtatctgtcccacctgctattaagtcctacgaaatagatatataacatatgatattggtatagtcttgtttagata |
7423441 |
T |
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| Q |
201 |
aataggttaattgagcatctatgt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
7423442 |
aataggttaattgagcatctatgt |
7423465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7429651 - 7429872
Alignment:
| Q |
1 |
aatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcggagatt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||| |
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| T |
7429651 |
aatgtctttctcttcaacccatctatctctccctattactctatctagttcctctgtagctctcttgataatctctggccttttcacaagctcagaaatt |
7429750 |
T |
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| Q |
101 |
gcccattcaactgtaactgtagatgtatctgtcccacctgctattaagtcctacgaaattgatatataacatatgatattggtatagtcttgtttagata |
200 |
Q |
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| T |
7429751 |
gcccattctattattacagaagaggtatctgtcccaccagctattaggtcctggggaatagatgtataacatatgatattagtatagtcttgtttggata |
7429850 |
T |
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| Q |
201 |
aataggttaattgagcatctat |
222 |
Q |
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|| ||||||||||| ||||||| |
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| T |
7429851 |
aaaaggttaattgaacatctat |
7429872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 7415583 - 7415701
Alignment:
| Q |
1 |
aatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctccgtagctctcttgataatctctggctttttcacaagctcggagatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||| ||| | ||||| ||||| || ||| |||||| |||||||| ||| | || |||||||||||| |
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| T |
7415583 |
aatgtctttctcttcaacccatctatcttttcctatcactctatctagctcctcggttgctttcttgaagatctctggttttctaaccagctcggagatt |
7415682 |
T |
|
| Q |
101 |
gcccattcaactgtaactg |
119 |
Q |
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|||||||| ||||| |||| |
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| T |
7415683 |
gcccattctactgttactg |
7415701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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