View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_154 (Length: 239)

Name: NF19103_low_154
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_154
NF19103_low_154
[»] chr4 (3 HSPs)
chr4 (74-148)||(55614767-55614841)
chr4 (152-221)||(55614810-55614879)
chr4 (4-40)||(55614507-55614543)
[»] chr3 (3 HSPs)
chr3 (74-148)||(16480532-16480606)
chr3 (152-221)||(16480494-16480563)
chr3 (4-40)||(16480830-16480866)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 55614767 - 55614841
Alignment:
Q  74 ttgagctgctgcgaaatgtatgaactgaaaggtaagtttgaggatctctcaaatatattcccaaacatgcttcat 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  55614767 ttgagctgctgcgaaatgtatgaactgaaaggtaagtttgaggatctctcaaacatattcccaaacatgcttcat 55614841  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 55614810 - 55614879
Alignment:
Q  152 atctctcaaacatattcccaaacaggcttcatgctcatgcttgaattgcattggtaagttgtagtcagac 221  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  55614810 atctctcaaacatattcccaaacatgcttcatgctcatgcttgaattgcattggtaagttgtagtcagac 55614879  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 55614507 - 55614543
Alignment:
Q  4 tattttatttttatgattggcgttcacgtctacattt 40  Q
    |||||||||||||||||||||||||||||||||||||    
T  55614507 tattttatttttatgattggcgttcacgtctacattt 55614543  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 16480606 - 16480532
Alignment:
Q  74 ttgagctgctgcgaaatgtatgaactgaaaggtaagtttgaggatctctcaaatatattcccaaacatgcttcat 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16480606 ttgagctgctgcgaaatgtatgaactgaaaggtaagtttgaggatctctcaaacatattcccaaacatgcttcat 16480532  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 16480563 - 16480494
Alignment:
Q  152 atctctcaaacatattcccaaacaggcttcatgctcatgcttgaattgcattggtaagttgtagtcagac 221  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16480563 atctctcaaacatattcccaaacatgcttcatgctcatgcttgaattgcattggtaagttgtagtcagac 16480494  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 16480866 - 16480830
Alignment:
Q  4 tattttatttttatgattggcgttcacgtctacattt 40  Q
    |||||||||||||||||||||||||||||||||||||    
T  16480866 tattttatttttatgattggcgttcacgtctacattt 16480830  T

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