View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_155 (Length: 239)
Name: NF19103_low_155
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_155 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 8870390 - 8870589
Alignment:
| Q |
17 |
cacagacagagattttaacatgccatcaatatgatttgatcctaatggattgtcaggtatgaatgaactagaataaaatatatattggtgacatcataat |
116 |
Q |
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| T |
8870390 |
cacagacagagattttaacatgccatcaatatgatttgatcctaatggattgtcaggtatgaatgaactagaataaaatatatattgatgacatcataat |
8870489 |
T |
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| Q |
117 |
ttaatagctttaggatttgaattgatttgaattgagcttatgtactgccataccataaccacttgtgaatatcaggttaaatatatatatactaatgctt |
216 |
Q |
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| T |
8870490 |
ttaatagctttaggatttgaattgattt-atttgagcttatgtactgccata-----agcacttgtgaatatcaggttaaatatatatatactaatgctt |
8870583 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 31858868 - 31858836
Alignment:
| Q |
45 |
atatgatttgatcctaatggattgtcaggtatg |
77 |
Q |
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| T |
31858868 |
atatgacttgatcctaatggattgtcaggtatg |
31858836 |
T |
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