View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_159 (Length: 238)

Name: NF19103_low_159
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_159
NF19103_low_159
[»] chr5 (2 HSPs)
chr5 (1-222)||(5258460-5258681)
chr5 (26-65)||(40355247-40355286)
[»] scaffold1640 (1 HSPs)
scaffold1640 (25-77)||(1130-1182)
[»] chr7 (3 HSPs)
chr7 (25-77)||(25768714-25768766)
chr7 (25-77)||(25774277-25774329)
chr7 (46-81)||(25774171-25774206)
[»] chr1 (2 HSPs)
chr1 (41-78)||(27939179-27939216)
chr1 (25-62)||(14214558-14214595)
[»] chr4 (2 HSPs)
chr4 (25-62)||(20215575-20215612)
chr4 (25-62)||(20788044-20788081)
[»] chr2 (2 HSPs)
chr2 (25-78)||(15119769-15119822)
chr2 (26-75)||(15446874-15446923)
[»] chr8 (1 HSPs)
chr8 (25-61)||(7428901-7428937)
[»] chr6 (1 HSPs)
chr6 (25-73)||(16199117-16199165)
[»] chr3 (1 HSPs)
chr3 (44-76)||(50603627-50603659)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5258681 - 5258460
Alignment:
Q  1 tagattgattcaataaatactagcgaatgaaccaaaaatgtgaatttttgcttataatagtgtccgaatgatgtatattttgtgatggtttagaattgcg 100  Q
    ||||||||||||||||||||||| ||||||||  |||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||    
T  5258681 tagattgattcaataaatactagtgaatgaacataaaatgtggatttttgcttataatagtgtccagatgatgtatattttgtgatggtttagaactgcg 5258582  T
Q  101 tagcatattaattcgagaaatccacagcacatgcttccaatatttctctgaactcttaaccatacatgtgttgtttgttggggaagcattttcttgtgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5258581 tagcatattaattcgagaaatccacagcacatgcttccaatatttctctgaactcttaaccatacatgtgttgtttgttggggaagcattttcttgtgga 5258482  T
Q  201 tctcataaatgtacgtattttg 222  Q
    ||||||||||||||||||||||    
T  5258481 tctcataaatgtacgtattttg 5258460  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 40355247 - 40355286
Alignment:
Q  26 aatgaaccaaaaatgtgaatttttgcttataatagtgtcc 65  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  40355247 aatgaaccaaaaatgtgagtttttgcttataatagtgtcc 40355286  T

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Target: scaffold1640 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1640
Description:

Target: scaffold1640; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 1182 - 1130
Alignment:
Q  25 gaatgaaccaaaaatgtgaatttttgcttataatagtgtccgaatgatgtata 77  Q
    ||||||| | |||||||| ||||||||||||||||||| ||||||||||||||    
T  1182 gaatgaatctaaaatgtgtatttttgcttataatagtgaccgaatgatgtata 1130  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 25768714 - 25768766
Alignment:
Q  25 gaatgaaccaaaaatgtgaatttttgcttataatagtgtccgaatgatgtata 77  Q
    ||||||| | |||||||| ||||||||||||||||||| ||||||||||||||    
T  25768714 gaatgaatctaaaatgtgtatttttgcttataatagtgaccgaatgatgtata 25768766  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 25774277 - 25774329
Alignment:
Q  25 gaatgaaccaaaaatgtgaatttttgcttataatagtgtccgaatgatgtata 77  Q
    ||||||| | |||||||| ||||||||||||||||||| | ||||||||||||    
T  25774277 gaatgaatctaaaatgtgtatttttgcttataatagtgactgaatgatgtata 25774329  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 25774206 - 25774171
Alignment:
Q  46 ttttgcttataatagtgtccgaatgatgtatatttt 81  Q
    ||||||||||||||||| ||||||||||||||||||    
T  25774206 ttttgcttataatagtgaccgaatgatgtatatttt 25774171  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 27939216 - 27939179
Alignment:
Q  41 tgaatttttgcttataatagtgtccgaatgatgtatat 78  Q
    |||||||||||||||||||||| |||||||||||||||    
T  27939216 tgaatttttgcttataatagtgaccgaatgatgtatat 27939179  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 14214595 - 14214558
Alignment:
Q  25 gaatgaaccaaaaatgtgaatttttgcttataatagtg 62  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  14214595 gaatgaacctaaaaagtgaatttttgcttataatagtg 14214558  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 20215612 - 20215575
Alignment:
Q  25 gaatgaaccaaaaatgtgaatttttgcttataatagtg 62  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  20215612 gaatgaacctaaaatgtcaatttttgcttataatagtg 20215575  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 20788081 - 20788044
Alignment:
Q  25 gaatgaaccaaaaatgtgaatttttgcttataatagtg 62  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  20788081 gaatgaacctaaaatatgaatttttgcttataatagtg 20788044  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 15119822 - 15119769
Alignment:
Q  25 gaatgaaccaaaaatgtgaatttttgcttataatagtgtccgaatgatgtatat 78  Q
    ||||||| | ||||||| |||||||||||||||||||| ||||| | |||||||    
T  15119822 gaatgaatctaaaatgttaatttttgcttataatagtgaccgaagggtgtatat 15119769  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 15446874 - 15446923
Alignment:
Q  26 aatgaaccaaaaatgtgaatttttgcttataatagtgtccgaatgatgta 75  Q
    |||||||| ||||  ||||||||| |||||||||||| ||||||||||||    
T  15446874 aatgaacctaaaaaatgaatttttacttataatagtgaccgaatgatgta 15446923  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 7428937 - 7428901
Alignment:
Q  25 gaatgaaccaaaaatgtgaatttttgcttataatagt 61  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  7428937 gaatgaacctaaaatatgaatttttgcttataatagt 7428901  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 16199165 - 16199117
Alignment:
Q  25 gaatgaaccaaaaatgtgaatttttgcttataatagtgtccgaatgatg 73  Q
    ||||||||| |||||||  ||||||||||||||||||| ||| ||||||    
T  16199165 gaatgaacctaaaatgtagatttttgcttataatagtgaccggatgatg 16199117  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 50603627 - 50603659
Alignment:
Q  44 atttttgcttataatagtgtccgaatgatgtat 76  Q
    ||||||||||||||||||| |||||||||||||    
T  50603627 atttttgcttataatagtgaccgaatgatgtat 50603659  T

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