View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_16 (Length: 472)

Name: NF19103_low_16
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_16
NF19103_low_16
[»] chr5 (1 HSPs)
chr5 (2-466)||(9463232-9463717)
[»] chr6 (2 HSPs)
chr6 (318-420)||(22389991-22390093)
chr6 (320-384)||(30775472-30775536)
[»] chr8 (3 HSPs)
chr8 (121-214)||(23822473-23822566)
chr8 (121-214)||(40171061-40171154)
chr8 (320-378)||(18850928-18850986)
[»] chr3 (5 HSPs)
chr3 (103-226)||(38509600-38509724)
chr3 (320-382)||(13364242-13364304)
chr3 (321-384)||(18986394-18986457)
chr3 (320-382)||(925629-925691)
chr3 (320-382)||(44703161-44703223)
[»] chr2 (3 HSPs)
chr2 (103-226)||(22144031-22144155)
chr2 (156-226)||(37458927-37458998)
chr2 (186-226)||(27561771-27561811)
[»] chr4 (5 HSPs)
chr4 (354-420)||(7118812-7118878)
chr4 (320-382)||(5454117-5454179)
chr4 (322-418)||(30176373-30176469)
chr4 (321-358)||(56476024-56476061)
chr4 (186-226)||(5742091-5742131)
[»] chr7 (6 HSPs)
chr7 (331-420)||(21314409-21314498)
chr7 (331-415)||(40674465-40674549)
chr7 (320-379)||(44117830-44117889)
chr7 (321-384)||(30068154-30068217)
chr7 (321-384)||(45137826-45137889)
chr7 (321-379)||(39274069-39274127)
[»] scaffold0007 (1 HSPs)
scaffold0007 (320-382)||(79364-79426)
[»] scaffold0361 (1 HSPs)
scaffold0361 (187-272)||(8004-8090)
[»] chr1 (1 HSPs)
chr1 (321-358)||(23263880-23263917)


Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 2 - 466
Target Start/End: Original strand, 9463232 - 9463717
Alignment:
Q  2 tatgtatatcctatattattcatattataaagtgtaaggtattttaatttaaatttaattaagggaaaaattctctcccattatgtgcacggatatacac 101  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||  ||||||||||||||||    
T  9463232 tatgtatatcctataatattcatattataaagtgtaaggtattttaatttaaatttaattaagagaaaaattctctctcattcggtgcacggatatacac 9463331  T
Q  102 actaaaactgaatgttccttttttcagttagaagttgattaagggtcctatattgtttgcgtctgattttttgacattaatttatagagaagcattgact 201  Q
    |||||||||||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |    
T  9463332 actaaaactgaatgttcctttttttagttataacttgattaagggtcctatactgtttgcgtctgattttttaacattaatttatagagaaacattgatt 9463431  T
Q  202 tttaaagcactgattatagagaagcgctgacnnnnnnnngtggaatcaaaactttttggccagatgtcatgtttatattaac------------------ 283  Q
    |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||                      
T  9463432 tttaaagcactgattatagagaagcgctgactttgttttgtggaatcaaaactttttggccagatgtcatgtttatattaacacgcttttgtggtgatat 9463531  T
Q  284 ----acgctgactttgaacgtcgatagtttcatgtatctcttttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttggcatatacct 379  Q
        ||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9463532 taatacgctgactttcaacgtcgacggtttcatgtatctcttttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttgacatatacct 9463631  T
Q  380 tcctcggtcaatgttttcacatggtcagctgtatgttgcaactgcattaatacgacttcaaatggggtgtatagagatattcttcga 466  Q
    | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||    
T  9463632 t-ctcggtcaatattttcacatggtcagctgtatgttgcaactgcattaatacgacttcaaatggggtgtataaagagatttttcga 9463717  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 318 - 420
Target Start/End: Complemental strand, 22390093 - 22389991
Alignment:
Q  318 tcttttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttggcatataccttcctcggtcaatgttttcacatggtcagctgtatgttg 417  Q
    |||||||| ||||||||||| ||||||||||  |||||||||||| ||||||||||||||||||||  |||| |||||||||||| |||  | |||||||    
T  22390093 tcttttgcgatgaccattaataaaagtcaaggacagtcactaaaataagttggcatataccttccttagtcagtgttttcacatgatcatatttatgttg 22389994  T
Q  418 caa 420  Q
    |||    
T  22389993 caa 22389991  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 384
Target Start/End: Original strand, 30775472 - 30775536
Alignment:
Q  320 ttttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttggcatataccttcctc 384  Q
    ||||||||||| ||| ||||||| ||||| ||||||||| ||  ||||||||||||| |||||||    
T  30775472 ttttgcaatgatcatcaacaaaaatcaagggcagtcactcaagcaagttggcatatatcttcctc 30775536  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 23822473 - 23822566
Alignment:
Q  121 tttttcagttagaagttgattaagggtcctatattgtttgcgtctgattttttgacattaatttatagagaagcattgacttttaaagcactga 214  Q
    ||||| ||||| |||||||||||||||||| ||  |||||| |||||||||||||||||||||||| ||||| ||||||  |||||||| ||||    
T  23822473 ttttttagttataagttgattaagggtcctttaaagtttgcatctgattttttgacattaatttatggagaatcattgatctttaaagcgctga 23822566  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 40171154 - 40171061
Alignment:
Q  121 tttttcagttagaagttgattaagggtcctatattgtttgcgtctgattttttgacattaatttatagagaagcattgacttttaaagcactga 214  Q
    ||||| ||||| |||||||||||||||||| ||  |||||| |||||||||||||||||||||||| ||||| ||||||  |||||||| ||||    
T  40171154 ttttttagttataagttgattaagggtcctttaaagtttgcatctgattttttgacattaatttatggagaatcattgatctttaaagcgctga 40171061  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 18850986 - 18850928
Alignment:
Q  320 ttttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttggcatatacc 378  Q
    ||||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||    
T  18850986 ttttgcaatgaccattaacaaaagtcaagcgtagtcactaaaacaagttggtatatacc 18850928  T

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Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 38509724 - 38509600
Alignment:
Q  103 ctaaaactgaatgttccttttttcagttagaagttgattaagggtcctatattgtttgcgtctgatt-ttttgacattaatttatagagaagcattgact 201  Q
    |||||| |||||||||||| ||| ||||||| ||||||  || ||||| |   |||||| ||||||| |||| |||| ||||| |||||||||||||| |    
T  38509724 ctaaaattgaatgttccttcttttagttagatgttgatcgagagtcctttgaagtttgcttctgattctttttacatgaatttgtagagaagcattgatt 38509625  T
Q  202 tttaaagcactgattatagagaagc 226  Q
    |||||||||||||||||| ||||||    
T  38509624 tttaaagcactgattataaagaagc 38509600  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 382
Target Start/End: Complemental strand, 13364304 - 13364242
Alignment:
Q  320 ttttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttggcatataccttcc 382  Q
    |||||||||||  |||||||||||||||| ||||||||||||| |||||| |||||| |||||    
T  13364304 ttttgcaatgattattaacaaaagtcaagggcagtcactaaaacaagttgacatatatcttcc 13364242  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 18986457 - 18986394
Alignment:
Q  321 tttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttggcatataccttcctc 384  Q
    ||||||||||| || ||||||||||||| ||| ||| | |||||||||||  ||||||||||||    
T  18986457 tttgcaatgacgatcaacaaaagtcaagggcaatcattgaaagaagttggagtataccttcctc 18986394  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 382
Target Start/End: Original strand, 925629 - 925691
Alignment:
Q  320 ttttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttggcatataccttcc 382  Q
    ||||||||||||||| ||||||||||| | ||| ||||| ||| | |||||||| ||||||||    
T  925629 ttttgcaatgaccatcaacaaaagtcaggggcaatcactcaaacaggttggcatttaccttcc 925691  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 382
Target Start/End: Complemental strand, 44703223 - 44703161
Alignment:
Q  320 ttttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttggcatataccttcc 382  Q
    ||||||||||||||| ||||||||||| | ||||||||| ||| | |||| ||| ||||||||    
T  44703223 ttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttgacatttaccttcc 44703161  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 22144155 - 22144031
Alignment:
Q  103 ctaaaactgaatgttccttttttcagttagaagttgattaagggtcctatattgtttgcgtctgatt-ttttgacattaatttatagagaagcattgact 201  Q
    |||||| |||||||||||| ||| ||||||| ||||||  || ||||| |   |||||| | ||||| ||||||||| ||||| |||||||||||||| |    
T  22144155 ctaaaattgaatgttccttcttttagttagatgttgatcgagagtcctttgaagtttgcttttgattcttttgacatgaatttgtagagaagcattgatt 22144056  T
Q  202 tttaaagcactgattatagagaagc 226  Q
    ||||||||| |||||||| ||||||    
T  22144055 tttaaagcattgattataaagaagc 22144031  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 37458927 - 37458998
Alignment:
Q  156 gtttgcgtctgatt-ttttgacattaatttatagagaagcattgacttttaaagcactgattatagagaagc 226  Q
    |||||| ||||||| ||||||||| ||||| |||||||||||||| ||||||||||||| ||||| ||||||    
T  37458927 gtttgcttctgattcttttgacatgaatttgtagagaagcattgatttttaaagcactggttataaagaagc 37458998  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 27561771 - 27561811
Alignment:
Q  186 tagagaagcattgacttttaaagcactgattatagagaagc 226  Q
    |||||||||||||| ||||||||||||| ||||| ||||||    
T  27561771 tagagaagcattgatttttaaagcactggttataaagaagc 27561811  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 7118878 - 7118812
Alignment:
Q  354 tcactaaaagaagttggcatataccttcctcggtcaatgttttcacatggtcagctgtatgttgcaa 420  Q
    ||||||| ||||||| |||||||| ||||||||| | |||||||||||||||| |||||||||||||    
T  7118878 tcactaatagaagtttgcatatactttcctcggttagtgttttcacatggtcaactgtatgttgcaa 7118812  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 382
Target Start/End: Original strand, 5454117 - 5454179
Alignment:
Q  320 ttttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttggcatataccttcc 382  Q
    ||||||||||||||| ||||||||||| | ||||||||| ||| | |||||||| ||||||||    
T  5454117 ttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttcc 5454179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 418
Target Start/End: Complemental strand, 30176469 - 30176373
Alignment:
Q  322 ttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttggcatataccttcctcggtcaatgttttcacatggtcagctgtatgttgc 418  Q
    |||||||||| |||||||||||||||   || ||||| ||| ||||||||||||| ||| | |  ||| |||| || |||||||| |||||||||||    
T  30176469 ttgcaatgactattaacaaaagtcaaagacaatcactcaaacaagttggcatatatctttcacaatcagtgttctcgcatggtcaactgtatgttgc 30176373  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 56476061 - 56476024
Alignment:
Q  321 tttgcaatgaccattaacaaaagtcaagtgcagtcact 358  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  56476061 tttgcaatgactattaacaaaagtcaagagcagtcact 56476024  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 5742131 - 5742091
Alignment:
Q  186 tagagaagcattgacttttaaagcactgattatagagaagc 226  Q
    |||||||||||||| ||||||||||||| ||||| ||||||    
T  5742131 tagagaagcattgatttttaaagcactggttataaagaagc 5742091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 21314498 - 21314409
Alignment:
Q  331 ccattaacaaaagtcaagtgcagtcactaaaagaagttggcatataccttcctcggtcaatgttttcacatggtcagctgtatgttgcaa 420  Q
    |||||||||||||||||  |||||||||| || ||||||| ||||||||||| | | ||||||| ||||||||||| || ||||| ||||    
T  21314498 ccattaacaaaagtcaaacgcagtcactacaacaagttggtatataccttccacagccaatgttctcacatggtcaactttatgtagcaa 21314409  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 415
Target Start/End: Complemental strand, 40674549 - 40674465
Alignment:
Q  331 ccattaacaaaagtcaagtgcagtcactaaaagaagttggcatataccttcctcggtcaatgttttcacatggtcagctgtatgt 415  Q
    |||||||||||||||||  |||||||||| || ||||||| ||||||||||| |   ||||||| ||||||||||| || |||||    
T  40674549 ccattaacaaaagtcaaacgcagtcactacaacaagttggtatataccttccacaaccaatgttctcacatggtcaactttatgt 40674465  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 379
Target Start/End: Original strand, 44117830 - 44117889
Alignment:
Q  320 ttttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttggcatatacct 379  Q
    |||||||||||||||||||||||| |||| ||| ||| ||||| |||||||||| |||||    
T  44117830 ttttgcaatgaccattaacaaaagccaagggcaatcattaaaataagttggcatctacct 44117889  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 30068154 - 30068217
Alignment:
Q  321 tttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttggcatataccttcctc 384  Q
    ||||||||||| || ||||||||||||| ||| ||| | |||||||||||  ||||||||||||    
T  30068154 tttgcaatgacgatcaacaaaagtcaagggcaatcattgaaagaagttggagtataccttcctc 30068217  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 45137826 - 45137889
Alignment:
Q  321 tttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttggcatataccttcctc 384  Q
    ||||||||||| || ||||||||||||| ||| ||| | |||||||||||  ||||||||||||    
T  45137826 tttgcaatgacgatcaacaaaagtcaagggcaatcattgaaagaagttggagtataccttcctc 45137889  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 379
Target Start/End: Complemental strand, 39274127 - 39274069
Alignment:
Q  321 tttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttggcatatacct 379  Q
    ||||||||||||||||| ||||| |||| ||| ||| ||||| |||||||||| |||||    
T  39274127 tttgcaatgaccattaataaaagccaagggcaatcattaaaacaagttggcatctacct 39274069  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 382
Target Start/End: Complemental strand, 79426 - 79364
Alignment:
Q  320 ttttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttggcatataccttcc 382  Q
    |||||||||||| || ||||||||||||| ||||||||| ||| |||||| |||||| |||||    
T  79426 ttttgcaatgactatgaacaaaagtcaagggcagtcactcaaacaagttgacatatatcttcc 79364  T

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Target: scaffold0361 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 8090 - 8004
Alignment:
Q  187 agagaagcattgacttttaaagcactgattatagagaagcgctgacnnnnnnnng-tggaatcaaaactttttggccagatgtcatg 272  Q
    ||||||||||||| ||||||||||||| ||||| ||||| ||||||        | |||||||||||||||| ||| ||||||||||    
T  8090 agagaagcattgatttttaaagcactggttataaagaagtgctgacttttttttgatggaatcaaaacttttaggctagatgtcatg 8004  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 23263880 - 23263917
Alignment:
Q  321 tttgcaatgaccattaacaaaagtcaagtgcagtcact 358  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  23263880 tttgcaatgactattaacaaaagtcaagagcagtcact 23263917  T

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