View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_168 (Length: 235)
Name: NF19103_low_168
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_168 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 43019164 - 43019383
Alignment:
| Q |
1 |
cgtgaggaggctgatcacttaccaatcctgcatactttgtcacttctggccagtcttgggaggctacaacctgaataacaatagtccgaatcgatcaaac |
100 |
Q |
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| T |
43019164 |
cgtgaggaggctgatcacttaccagtcctgcatactttgtcacttctggccagtcttgggaggctacaacctgaataacaatagtctgaatcgatcaaac |
43019263 |
T |
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| Q |
101 |
acagggtgagctgtttatgagttcagacgagtgttacacatcttgaatgatcctttttacaatttcattatgaaaaatatttggtatacgttcgtatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43019264 |
acagggtgagctgtttatgagttcagacgagtgttacacatcttgaatgatcctttttacaatttcattatgaaaaatatttggtatacgttcgtatgaa |
43019363 |
T |
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| Q |
201 |
agaaagagataagaaacatt |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
43019364 |
agaaagagataagaaacatt |
43019383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 46530774 - 46530666
Alignment:
| Q |
4 |
gaggaggctgatcacttaccaatcctgcatactttgtcacttctggccagtcttgggaggctacaacctgaataacaatagtccgaatcgatcaaacaca |
103 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| | |
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| T |
46530774 |
gaggaggctgagcacataccaatcctgcatactttgtcacttctggccagtcttgggaggctacaacctgaataacaatattcagaaccgatcaaacata |
46530675 |
T |
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| Q |
104 |
gggtgagct |
112 |
Q |
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| T |
46530674 |
gggagagct |
46530666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 24598119 - 24598067
Alignment:
| Q |
21 |
accaatcctgcatactttgtcacttctggccagtcttgggaggctacaacctg |
73 |
Q |
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| T |
24598119 |
accaaccctgcatactttgttacttctggccagtcctgggaggctacaacctg |
24598067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 24615995 - 24616047
Alignment:
| Q |
21 |
accaatcctgcatactttgtcacttctggccagtcttgggaggctacaacctg |
73 |
Q |
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||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
24615995 |
accaaccctgcatactttgttacttctggccagtcctgggaggctacaacctg |
24616047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 46834952 - 46834994
Alignment:
| Q |
30 |
gcatactttgtcacttctggccagtcttgggaggctacaacct |
72 |
Q |
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||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
46834952 |
gcatattttgtcacttcaggccagtcttgggaagctacaacct |
46834994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 46376688 - 46376646
Alignment:
| Q |
30 |
gcatactttgtcacttctggccagtcttgggaggctacaacct |
72 |
Q |
| |
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||||| ||||||||||| ||||| ||||||||||||||||||| |
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| T |
46376688 |
gcatattttgtcacttcaggccaatcttgggaggctacaacct |
46376646 |
T |
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