View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_169 (Length: 235)
Name: NF19103_low_169
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_169 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3712650 - 3712431
Alignment:
| Q |
1 |
aaaactgtaagaaactaggttctaggctaaaagaacaagagaagaaacaactacaaaataaaatacaactcatttcattcattttggttgatttgcaagg |
100 |
Q |
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| T |
3712650 |
aaaactgtaagaaactaggttctaggctaaaagaacaagagaagaaacaactacaaaataaaatacaactcttttcattcattttagttgatttgcaagg |
3712551 |
T |
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| Q |
101 |
tgtctcaaaatttaatccgtgtgttataatttggtttggcaacaaaagtatggagctttatataagatttgttcatggaaaaattaccccttaattcgtt |
200 |
Q |
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| T |
3712550 |
tgtctcaaaagttaatccgtgtgttataatttggttaggcaacaaaagtatggaactttatataagattttttcatgggaaaattaccctttagttcgta |
3712451 |
T |
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| Q |
201 |
tgtagtcacacagtccaact |
220 |
Q |
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|||||||||||| ||||||| |
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| T |
3712450 |
tgtagtcacacaatccaact |
3712431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 3719389 - 3719309
Alignment:
| Q |
140 |
caacaaaagtatggagctttatataagatttgttcatggaaaaattaccccttaattcgtttgtagtcacacagtccaact |
220 |
Q |
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| T |
3719389 |
caacaaaagtatgtaactttatataagatttgttcatgggaaaattaccccttaattcctttgtagtcacacagtccaact |
3719309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 3700726 - 3700690
Alignment:
| Q |
74 |
ttcattcattttggttgatttgcaaggtgtctcaaaa |
110 |
Q |
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| T |
3700726 |
ttcattcattttggttgatttgaaaagtgtctcaaaa |
3700690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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