View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_17 (Length: 472)

Name: NF19103_low_17
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_17
NF19103_low_17
[»] chr7 (30 HSPs)
chr7 (160-343)||(25674892-25675075)
chr7 (4-84)||(47945089-47945169)
chr7 (4-84)||(47950519-47950599)
chr7 (1-81)||(24380609-24380689)
chr7 (1-80)||(41538583-41538662)
chr7 (1-74)||(27704538-27704611)
chr7 (1-86)||(48639268-48639353)
chr7 (1-81)||(23034201-23034281)
chr7 (1-81)||(41910073-41910153)
chr7 (1-92)||(29923774-29923864)
chr7 (1-74)||(44185279-44185352)
chr7 (1-81)||(1709387-1709467)
chr7 (341-420)||(25675119-25675199)
chr7 (161-230)||(25675746-25675815)
chr7 (1-73)||(37848516-37848588)
chr7 (421-472)||(25675242-25675293)
chr7 (4-81)||(45335969-45336046)
chr7 (1-81)||(17039260-17039340)
chr7 (1-74)||(38197764-38197837)
chr7 (161-242)||(48627763-48627844)
chr7 (161-225)||(26582629-26582693)
chr7 (1-74)||(7295570-7295643)
chr7 (161-262)||(44390691-44390791)
chr7 (159-251)||(48628500-48628591)
chr7 (1-81)||(49142405-49142485)
chr7 (35-74)||(2980624-2980663)
chr7 (1-72)||(25272694-25272765)
chr7 (40-74)||(11788383-11788417)
chr7 (161-242)||(48205454-48205535)
chr7 (1-81)||(37970036-37970116)
[»] chr2 (51 HSPs)
chr2 (161-343)||(4855226-4855408)
chr2 (5-81)||(26387719-26387795)
chr2 (1-81)||(1096231-1096311)
chr2 (1-81)||(5852561-5852641)
chr2 (1-81)||(34141546-34141626)
chr2 (5-72)||(44897733-44897800)
chr2 (341-420)||(4855089-4855169)
chr2 (1-81)||(12257004-12257084)
chr2 (4-83)||(37064164-37064243)
chr2 (4-74)||(28679233-28679303)
chr2 (1-74)||(16463395-16463468)
chr2 (4-81)||(23141460-23141537)
chr2 (4-81)||(23553250-23553327)
chr2 (4-81)||(30340100-30340177)
chr2 (1-74)||(35518378-35518451)
chr2 (1-74)||(8757647-8757720)
chr2 (1-82)||(38027502-38027583)
chr2 (161-262)||(38823220-38823321)
chr2 (1-81)||(38598238-38598317)
chr2 (421-472)||(4854995-4855046)
chr2 (1-83)||(11152585-11152667)
chr2 (1-83)||(11828706-11828788)
chr2 (1-83)||(35705803-35705885)
chr2 (1-83)||(45202018-45202100)
chr2 (161-250)||(40321142-40321231)
chr2 (161-225)||(4854473-4854537)
chr2 (1-85)||(24491561-24491645)
chr2 (1-85)||(35007985-35008069)
chr2 (161-265)||(42330918-42331022)
chr2 (1-72)||(43205196-43205267)
chr2 (161-225)||(3467348-3467412)
chr2 (1-73)||(27538828-27538900)
chr2 (1-85)||(35203633-35203717)
chr2 (1-71)||(17999847-17999917)
chr2 (1-51)||(26273277-26273327)
chr2 (1-83)||(27529630-27529712)
chr2 (5-91)||(41156881-41156967)
chr2 (1-74)||(18749258-18749331)
chr2 (161-218)||(40320241-40320298)
chr2 (33-74)||(43515026-43515067)
chr2 (161-213)||(15974709-15974761)
chr2 (1-81)||(38533086-38533166)
chr2 (42-85)||(9384519-9384562)
chr2 (1-72)||(35798312-35798383)
chr2 (167-261)||(16870585-16870679)
chr2 (1-83)||(40115618-40115700)
chr2 (187-225)||(42062997-42063035)
chr2 (42-80)||(43076440-43076478)
chr2 (1-85)||(304876-304960)
chr2 (5-73)||(22296025-22296093)
chr2 (161-213)||(42149632-42149684)
[»] chr1 (27 HSPs)
chr1 (159-282)||(41459386-41459509)
chr1 (1-84)||(41564765-41564848)
chr1 (1-82)||(23399876-23399957)
chr1 (5-74)||(29094643-29094712)
chr1 (1-74)||(48962089-48962162)
chr1 (5-81)||(12990373-12990449)
chr1 (1-81)||(29638818-29638898)
chr1 (1-66)||(30414967-30415032)
chr1 (1-74)||(37947115-37947188)
chr1 (1-73)||(40240007-40240079)
chr1 (1-80)||(51666863-51666942)
chr1 (7-81)||(835980-836054)
chr1 (1-83)||(12972592-12972674)
chr1 (1-82)||(5574162-5574243)
chr1 (1-74)||(8577397-8577470)
chr1 (1-74)||(31244630-31244703)
chr1 (1-72)||(26760665-26760736)
chr1 (161-271)||(46178120-46178230)
chr1 (1-87)||(46903573-46903659)
chr1 (1-74)||(48336350-48336423)
chr1 (153-261)||(7338767-7338875)
chr1 (4-74)||(22674803-22674873)
chr1 (1-83)||(27954331-27954413)
chr1 (5-83)||(40118601-40118679)
chr1 (1-81)||(1100320-1100400)
chr1 (7-83)||(11897283-11897359)
chr1 (161-217)||(30430437-30430493)
[»] chr8 (28 HSPs)
chr8 (1-82)||(25430749-25430830)
chr8 (1-74)||(34838165-34838238)
chr8 (1-84)||(28713196-28713279)
chr8 (1-84)||(28720543-28720626)
chr8 (1-84)||(28728185-28728268)
chr8 (1-82)||(4148542-4148623)
chr8 (1-74)||(18550082-18550155)
chr8 (4-86)||(21649053-21649135)
chr8 (1-74)||(27300449-27300522)
chr8 (1-86)||(41776278-41776363)
chr8 (1-85)||(22836023-22836107)
chr8 (161-265)||(40030495-40030599)
chr8 (1-74)||(22203110-22203183)
chr8 (1-70)||(35701742-35701811)
chr8 (1-83)||(37471746-37471828)
chr8 (1-74)||(8233391-8233464)
chr8 (1-74)||(34247877-34247950)
chr8 (1-74)||(42651023-42651096)
chr8 (33-74)||(1422597-1422638)
chr8 (161-262)||(20168982-20169082)
chr8 (1-74)||(23265248-23265321)
chr8 (5-73)||(13924116-13924184)
chr8 (157-232)||(13017081-13017156)
chr8 (1-72)||(23709079-23709150)
chr8 (161-271)||(13017742-13017852)
chr8 (4-74)||(33692827-33692897)
chr8 (1-87)||(44001159-44001245)
chr8 (1-74)||(34578232-34578305)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-81)||(145150-145230)
[»] chr5 (26 HSPs)
chr5 (1-81)||(34693104-34693184)
chr5 (1-81)||(39032492-39032572)
chr5 (1-88)||(37821022-37821109)
chr5 (1-82)||(18729164-18729245)
chr5 (4-85)||(21771357-21771438)
chr5 (1-81)||(14126517-14126597)
chr5 (1-81)||(35616689-35616769)
chr5 (4-80)||(38919952-38920028)
chr5 (1-87)||(17574106-17574192)
chr5 (1-74)||(12612912-12612985)
chr5 (1-73)||(25585352-25585424)
chr5 (161-262)||(2398221-2398321)
chr5 (1-74)||(6458870-6458943)
chr5 (158-251)||(31607253-31607346)
chr5 (1-74)||(42364532-42364605)
chr5 (1-72)||(14522861-14522932)
chr5 (161-259)||(33432924-33433022)
chr5 (4-74)||(36899376-36899446)
chr5 (4-85)||(35924376-35924457)
chr5 (1-74)||(43152955-43153028)
chr5 (42-90)||(2117520-2117567)
chr5 (5-73)||(12203252-12203320)
chr5 (167-261)||(33530668-33530762)
chr5 (1-74)||(9940157-9940230)
chr5 (1-74)||(33893689-33893762)
chr5 (1-74)||(35595881-35595954)
[»] chr4 (34 HSPs)
chr4 (4-84)||(36110240-36110320)
chr4 (1-84)||(50291385-50291468)
chr4 (2-82)||(18944389-18944469)
chr4 (4-81)||(38960548-38960625)
chr4 (161-229)||(31414076-31414144)
chr4 (5-80)||(39699356-39699431)
chr4 (1-74)||(21766650-21766723)
chr4 (1-83)||(8614285-8614367)
chr4 (1-83)||(32294638-32294720)
chr4 (1-74)||(4878070-4878143)
chr4 (1-74)||(22893971-22894044)
chr4 (1-74)||(22945639-22945712)
chr4 (1-74)||(33776997-33777070)
chr4 (161-250)||(17869644-17869733)
chr4 (1-74)||(45678366-45678439)
chr4 (1-74)||(46791886-46791959)
chr4 (4-84)||(8487741-8487821)
chr4 (1-85)||(24310405-24310489)
chr4 (161-225)||(44095304-44095368)
chr4 (1-79)||(1727979-1728057)
chr4 (4-74)||(31413681-31413751)
chr4 (1-74)||(19807313-19807386)
chr4 (4-84)||(4577670-4577749)
chr4 (1-73)||(43307261-43307332)
chr4 (4-83)||(1868779-1868858)
chr4 (1-86)||(9096040-9096124)
chr4 (1-74)||(43983000-43983073)
chr4 (1-74)||(53781732-53781805)
chr4 (189-225)||(27860983-27861019)
chr4 (42-74)||(36848347-36848379)
chr4 (35-87)||(47998730-47998781)
chr4 (165-247)||(2924423-2924505)
chr4 (1-47)||(23133471-23133517)
chr4 (1-87)||(42915102-42915187)
[»] chr3 (34 HSPs)
chr3 (1-81)||(29555729-29555809)
chr3 (1-83)||(14838931-14839013)
chr3 (1-84)||(44689906-44689989)
chr3 (4-82)||(7351525-7351603)
chr3 (1-92)||(9027716-9027808)
chr3 (1-83)||(48117439-48117521)
chr3 (1-74)||(43149238-43149311)
chr3 (1-84)||(30664604-30664687)
chr3 (1-74)||(32151996-32152069)
chr3 (1-69)||(9158936-9159004)
chr3 (1-83)||(29846777-29846859)
chr3 (161-251)||(40613055-40613145)
chr3 (19-89)||(40821740-40821810)
chr3 (1-86)||(35368714-35368799)
chr3 (161-230)||(44636976-44637047)
chr3 (4-80)||(55264923-55264999)
chr3 (1-84)||(21481867-21481949)
chr3 (161-230)||(19251703-19251772)
chr3 (5-74)||(29057755-29057824)
chr3 (1-74)||(33971986-33972059)
chr3 (1-74)||(42888668-42888740)
chr3 (1-74)||(43894880-43894953)
chr3 (161-226)||(44637768-44637833)
chr3 (1-74)||(50745652-50745725)
chr3 (1-81)||(16295567-16295647)
chr3 (1-81)||(48490401-48490481)
chr3 (1-73)||(51385336-51385408)
chr3 (1-83)||(2935397-2935479)
chr3 (1-83)||(27276837-27276919)
chr3 (5-86)||(43220025-43220106)
chr3 (1-74)||(44827056-44827129)
chr3 (1-90)||(49361716-49361805)
chr3 (160-217)||(52103508-52103565)
chr3 (1-81)||(48205148-48205228)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-84)||(48757-48840)
[»] chr6 (15 HSPs)
chr6 (1-86)||(17442925-17443010)
chr6 (1-82)||(34792109-34792190)
chr6 (1-74)||(7304000-7304073)
chr6 (1-74)||(608556-608629)
chr6 (1-74)||(9395232-9395305)
chr6 (3-74)||(6997445-6997516)
chr6 (1-86)||(19713097-19713182)
chr6 (1-74)||(32135332-32135405)
chr6 (1-47)||(27790157-27790203)
chr6 (1-74)||(10557512-10557585)
chr6 (4-74)||(16121258-16121328)
chr6 (1-83)||(22422253-22422335)
chr6 (1-74)||(2165195-2165268)
chr6 (1-74)||(2176828-2176901)
chr6 (35-88)||(2241708-2241760)
[»] scaffold0098 (1 HSPs)
scaffold0098 (161-245)||(52264-52348)
[»] scaffold0514 (1 HSPs)
scaffold0514 (4-81)||(1735-1812)
[»] scaffold0058 (1 HSPs)
scaffold0058 (1-74)||(3046-3119)
[»] scaffold0286 (1 HSPs)
scaffold0286 (1-74)||(17141-17214)
[»] scaffold0592 (1 HSPs)
scaffold0592 (1-65)||(1013-1077)
[»] scaffold0020 (1 HSPs)
scaffold0020 (161-217)||(155425-155481)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 160 - 343
Target Start/End: Original strand, 25674892 - 25675075
Alignment:
Q  160 cgagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaa 259  Q
    |||||||||||||||||||||| | ||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  25674892 cgagttcatctttgctccatttgtgtttgctcaatttactccttttcaatgtatagatgtgtgacacgtggaacaaacaaattcaaaggctatgattaaa 25674991  T
Q  260 agattagaaataagtattgttacaaaagatgtaacgcatcnnnnnnncctctcctgatacaatgcttaactttcatcttcctct 343  Q
    ||||||||||||||||||||||||||| ||||||||||||       |||||| ||||||| ||||||||||||||||||||||    
T  25674992 agattagaaataagtattgttacaaaaaatgtaacgcatctttttttcctctcttgatacagtgcttaactttcatcttcctct 25675075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 47945089 - 47945169
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttt 84  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  47945089 tttttgaccaataagaagagaacacaacaaggttgtcccaaaagttgtatcaaaagagttgttcaaatatcactactcttt 47945169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 47950519 - 47950599
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttt 84  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  47950519 tttttgaccaataagaagagaacacaacaaggttgtcccaaaagttgtatcaaaagagttgttcaaatatcactactcttt 47950599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 24380689 - 24380609
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||||||||||||||||||| ||||||    
T  24380689 ttgtttttgaccaataagaagagaacacaacaaggttgttccaaaagttgtaccaaaagagttgttcaaatatcactactc 24380609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 41538583 - 41538662
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctact 80  Q
    |||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||    
T  41538583 ttgtttttgaccaataagaagataacacaacaaggttgtcccaaaagttgtatcaaaagaattgttcaaatatcactact 41538662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27704538 - 27704611
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||||||||||||    
T  27704538 ttgtttttgaccaataagaagagaacacaacaaagttgtcccaaaagttgtaacaaaagagttgttcaaatatc 27704611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 48639353 - 48639268
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttttt 86  Q
    |||||||||||||||| |||||||||||||| ||||| | |||||||||||| ||||||||||||||||||||| |||||| ||||    
T  48639353 ttgtttttgaccaatacgaagagaacacaacaaggttgttccaaaagttgtaccaaaagagttgttcaaatatcactactcatttt 48639268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 23034281 - 23034201
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    |||||||||||||||||||| ||| |||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  23034281 ttgtttttgaccaataagaaaagagcacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 23034201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 41910153 - 41910073
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||| ||||||||||||| ||||||    
T  41910153 ttgtttttgaccaataagaagagaacacaacaaggttgtcctaaaagttgtaccaaaagaattgttcaaatatcactactc 41910073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 29923774 - 29923864
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctttttaaaaat 92  Q
    |||||||||||||||||||| |||||||||| ||||| ||| |||||||||| ||||||||||||||||||||| |||||| ||| ||||||    
T  29923774 ttgtttttgaccaataagaaaagaacacaacaaggttgtcc-aaaagttgtaccaaaagagttgttcaaatatcactactcatttaaaaaat 29923864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 44185279 - 44185352
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| ||||||||  |||| |||||| || |||||||||||||||||||||||||||||||||    
T  44185279 ttgtttttgaccaatgagaagagagaacaatgaggttgtctcaaaagttgtatcaaaagagttgttcaaatatc 44185352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 1709387 - 1709467
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||||||||| ||||||||||||| || || |||||||| || || ||||||||||||||||||||| ||||||    
T  1709387 ttgtttttgaccaataaaaagagaacacaacaagattgtcccaaaaattataccaaaagagttgttcaaatatcactactc 1709467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 341 - 420
Target Start/End: Original strand, 25675119 - 25675199
Alignment:
Q  341 tctgcgccacccatctctgcc-tttgcggcgaatttaattgttgaaacttgaaacctctggcatcactgttagtggcggat 420  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||| ||||    
T  25675119 tctgcgccacccatctccgccgtttgcggcgaatttgattgttgatacttgaaacctttggcatcattgttagtggtggat 25675199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 25675815 - 25675746
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtgg 230  Q
    ||||||||||||||||||||| | || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  25675815 gagttcatctttgctccatttatgttggctccatttactccttttcaatgtatagatgtgtgacatgtgg 25675746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 37848588 - 37848516
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatat 73  Q
    ||||||||||||||| | |||||| |||||| ||||||||| |||||||||| ||||| ||||||||||||||    
T  37848588 ttgtttttgaccaatgaaaagagagcacaacaaggttatcctaaaagttgtagcaaaaaagttgttcaaatat 37848516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 421 - 472
Target Start/End: Original strand, 25675242 - 25675293
Alignment:
Q  421 ttgaaattgagagaagcaaaattaagggaattggaagatgattttgaggttt 472  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  25675242 ttgaaattgagagaagcaaaattaaggtgattggaagatgattttgaggttt 25675293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 45335969 - 45336046
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    |||||||||||||| ||||||  ||||| ||||| |||||||| ||||| ||||||||| ||||||||||| ||||||    
T  45335969 tttttgaccaataaaaagagagaacaacaaggttgtcccaaaatttgtaccaaaagagtagttcaaatatcactactc 45336046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 17039260 - 17039340
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||||||| | ||||||||||||| ||||| |||||||| || || ||||| | |||||||||||||| |||||    
T  17039260 ttgtttttgaccaatgaaaagagaacacaacaaggttgtcccaaaaattatagcaaaaaaattgttcaaatatcgttactc 17039340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 38197764 - 38197837
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | |||| | |||||| || || |||||||||||||| ||||| |||||||||||||||    
T  38197764 ttgtttttgaccaatgaaaagatagcacaacaagattgtcccaaaagttgtagcaaaaaagttgttcaaatatc 38197837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 48627763 - 48627844
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatc 242  Q
    |||||||||||||||||||||    ||||||||||||||| |||| |||||||  |||| ||||| |||||| |||||||||    
T  48627763 gagttcatctttgctccatttaccattgctccatttactccttttgaatgcatgaatgtttgacatgtggaaaaaacaaatc 48627844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 26582693 - 26582629
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgaca 225  Q
    |||||||||||| |||||||| |||||||||||||||||| |||| |||  | ||||||||||||    
T  26582693 gagttcatctttactccatttatatttgctccatttactccttttaaatttacagatgtgtgaca 26582629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 7295570 - 7295643
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| ||||||||  | ||| ||||| | ||||||||||| |||||| |||||| ||||||||    
T  7295570 ttgtttttgaccaatgagaagagagaataacaaggttgttccaaaagttgtctcaaaaaagttgtacaaatatc 7295643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 44390791 - 44390691
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 260  Q
    |||| |||||||||||||||| |  ||||||||||||||| |||| ||| || |||| ||||||| |||| | ||| ||||| ||||||||  |||||||    
T  44390791 gagtgcatctttgctccatttatgattgctccatttactcctttttaattcacagatatgtgacatgtggca-aaaaaaatctaaaggctacaattaaaa 44390693  T
Q  261 ga 262  Q
    ||    
T  44390692 ga 44390691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 48628591 - 48628500
Alignment:
Q  159 acgagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggcta 251  Q
    |||||||||||||| ||||||||    ||||||||||||||| |||| ||||||| ||||| ||| | |||||| ||||||||| || |||||    
T  48628591 acgagttcatctttactccatttaccattgctccatttactccttttgaatgcatggatgtttga-atgtggaaaaaacaaatctaatggcta 48628500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 49142485 - 49142405
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||| ||||||||| |||||| || | ||| ||||| || |||||||||||  |||||||||||||||||| | ||||||    
T  49142485 ttgttattgaccaatgagaagaaaaaataacaaggttgtcacaaaagttgtaataaaagagttgttcaaataacactactc 49142405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 2980663 - 2980624
Alignment:
Q  35 gttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  2980663 gttatcccaaaagttatatcaaaaaagttgttcaaatatc 2980624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 25272694 - 25272765
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaata 72  Q
    ||||| |||||||||||||||| |  | ||| ||||| || |||||||||||  ||||||||||||||||||    
T  25272694 ttgttattgaccaataagaagaaagaataacaaggttgtcacaaaagttgtactaaaagagttgttcaaata 25272765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 11788417 - 11788383
Alignment:
Q  40 cccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||||||| |||||||||||||||    
T  11788417 cccaaaagttgtatcaaaatagttgttcaaatatc 11788383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 48205535 - 48205454
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatc 242  Q
    |||| ||||||||||||||||     |||||||||||||| |||| ||||||||||||| |||||  ||||| ||| |||||    
T  48205535 gagtccatctttgctccatttaaccatgctccatttactccttttgaatgcatagatgtttgacatatggaaaaaataaatc 48205454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 37970036 - 37970116
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||||||| ||||||||  ||||| | ||| || |||| |||||| |||||  |||||| ||||||| ||||||    
T  37970036 ttgtttttgaccaatgagaagagagaacaacaaagttgtctcaaatgttgtaccaaaatggttgttaaaatatcactactc 37970116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 51)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 161 - 343
Target Start/End: Complemental strand, 4855408 - 4855226
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 260  Q
    ||||||||||||||||||||| | ||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4855408 gagttcatctttgctccatttatgtttgctcaatttactccttttcaatgtatagatgtgtgacacgtggaacaaacaaattcaaaggctatgattaaaa 4855309  T
Q  261 gattagaaataagtattgttacaaaagatgtaacgcatcnnnnnnncctctcctgatacaatgcttaactttcatcttcctct 343  Q
    |||||||||||||||| ||||||||| ||||||||||||       |||||| ||||||| |  |||||||||||||||||||    
T  4855308 gattagaaataagtatcgttacaaaaaatgtaacgcatctttttttcctctcttgatacagtcgttaactttcatcttcctct 4855226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 26387795 - 26387719
Alignment:
Q  5 ttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    |||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  26387795 ttttgaccaataagaaaagaacacaacaaggttgtcccaaaagttgtatcaaaagagttgttcaaatatcactactc 26387719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 1096311 - 1096231
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||||||||||||||||||||||| |  || ||| |||||||||||||||||||||||||||||||| ||||||    
T  1096311 ttgtttttgaccaataagaagagaacacaacaaaattgtcctaaaagttgtatcaaaagagttgttcaaatatcactactc 1096231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 5852561 - 5852641
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||| ||||||    
T  5852561 ttgtttttgacaaataagaagagaacacaacaaggttgtcccaaaagttttaccaaaagagttgttcaaatatcactactc 5852641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 34141546 - 34141626
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||||||||||||||||||||||| | ||| | |||||||||||| ||||||||||||||||||||| ||||||    
T  34141546 ttgtttttgaccaataagaagagaacacaacaaagttgttccaaaagttgtaccaaaagagttgttcaaatatcactactc 34141626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 44897733 - 44897800
Alignment:
Q  5 ttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaata 72  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  44897733 ttttgaccaataaaaagagaacacaacaaggttgtcccaaaagttgtatcaaaagagttgttcaaata 44897800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 341 - 420
Target Start/End: Complemental strand, 4855169 - 4855089
Alignment:
Q  341 tctgcgccacccatctctgcc-tttgcggcgaatttaattgttgaaacttgaaacctctggcatcactgttagtggcggat 420  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||||    
T  4855169 tctgcgccacccatctccgccgtttgcggcgaatttgattgttgatacttgaaacctctggcatcattgttagtggtggat 4855089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 12257004 - 12257084
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    |||||||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||| ||||||||||||||| ||||||    
T  12257004 ttgtttttgaccaataagaagaaaacacaacaaggttgtcccaaaaattgtaccaaaaaagttgttcaaatatcactactc 12257084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 37064164 - 37064243
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    |||||||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||  |||||||    
T  37064164 tttttgaccaatgagaagagaaaacaacaaggttatcccaaaagttgtaccaaaagagttgatcaaatatcagtactctt 37064243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 28679233 - 28679303
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||    
T  28679233 ttttttaccaataagaagagaatacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatc 28679303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 16463395 - 16463468
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    |||||||||||||||||||||||| |||||| || || |||||||||||||| || ||||||||||||||||||    
T  16463395 ttgtttttgaccaataagaagagagcacaacaagattgtcccaaaagttgtaccataagagttgttcaaatatc 16463468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 23141460 - 23141537
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    |||||||||||| ||||||||  ||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  23141460 tttttgaccaatgagaagagagaacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 23141537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 23553250 - 23553327
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    |||||||||||| ||||||||  ||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  23553250 tttttgaccaatgagaagagagaacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 23553327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 30340100 - 30340177
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    |||||||||||| ||||||||  ||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  30340100 tttttgaccaatgagaagagagaacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 30340177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 35518378 - 35518451
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||||||||||||  ||||| | ||| |||||||||||||||||||| |||||||||||||||    
T  35518378 ttgtttttgaccaataagaagagagaacaacaaagttgtcccaaaagttgtatcaaaatagttgttcaaatatc 35518451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8757647 - 8757720
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||||||||||||  ||||| ||||| | |||||||||||| ||||| |||||||||||||||    
T  8757647 ttgtttttgaccaataagaagagagaacaacaaggttgtaccaaaagttgtaccaaaatagttgttcaaatatc 8757720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 38027583 - 38027502
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactct 82  Q
    ||||||||||||||||||||||||||||||| ||||| |  |||||||| ||  |||||||||||| ||||||| |||||||    
T  38027583 ttgtttttgaccaataagaagagaacacaacaaggttgtttcaaaagttatactaaaagagttgtttaaatatcactactct 38027502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 161 - 262
Target Start/End: Original strand, 38823220 - 38823321
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 260  Q
    ||||||||||||||||||||| |||||||||||||||||| |||| |||  | |||||||||||| |||||| ||| ||||  |||| | | ||||||||    
T  38823220 gagttcatctttgctccatttatatttgctccatttactccttttgaatttacagatgtgtgacatgtggaaaaaataaatgtaaagacaaagattaaaa 38823319  T
Q  261 ga 262  Q
    ||    
T  38823320 ga 38823321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 38598317 - 38598238
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||||||||||||||||||||||| ||||| || |||||||| || | ||| ||||||||||||||| ||||||    
T  38598317 ttgtttttgaccaataagaagagaacacaacaaggttgtcacaaaagttata-ctaaaaagttgttcaaatatcactactc 38598238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 421 - 472
Target Start/End: Complemental strand, 4855046 - 4854995
Alignment:
Q  421 ttgaaattgagagaagcaaaattaagggaattggaagatgattttgaggttt 472  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  4855046 ttgaaattgagagaagcaaaattaaggtgattggaagatgattttgaggttt 4854995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 11152667 - 11152585
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    ||||||||||||||||| ||||||||||||| || || ||||||||| |||| ||||| | |||||||||||||  |||||||    
T  11152667 ttgtttttgaccaataaaaagagaacacaacaagattgtcccaaaagctgtaccaaaaaatttgttcaaatatcattactctt 11152585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 11828788 - 11828706
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    ||||||||||||||| | |||||| |||||| ||||| ||| |||||||||| ||||| |||||||||||||||  |||||||    
T  11828788 ttgtttttgaccaatgaaaagagagcacaacaaggttgtcctaaaagttgtagcaaaaaagttgttcaaatatcattactctt 11828706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35705885 - 35705803
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    ||||||||||||||| | |||||| |||||| || || |||||||||||||| ||||| |||||||||||||||  |||||||    
T  35705885 ttgtttttgaccaatgaaaagagagcacaacaagattgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactctt 35705803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 45202100 - 45202018
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    |||||||||| |||| | |||||| |||||| ||||| |||||||||||||| ||||| |||||||||||||||  |||||||    
T  45202100 ttgtttttgatcaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactctt 45202018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 40321231 - 40321142
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggct 250  Q
    |||||||||||||||||||||    ||||||||||||||| |||||||||||||||||  |||||| ||| | ||| |||||||| ||||    
T  40321231 gagttcatctttgctccatttagccttgctccatttactccttttcaatgcatagatgcatgacacatggtaaaaataaatccaagggct 40321142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 4854473 - 4854537
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgaca 225  Q
    ||||||||||||||||||||| | ||  |||||||||||| ||||||||| ||||||||||||||    
T  4854473 gagttcatctttgctccatttatgttgactccatttactccttttcaatgtatagatgtgtgaca 4854537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 24491645 - 24491561
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctttt 85  Q
    |||||||| |||||||||||||||  ||||  || || || ||||||||||||||||||| ||||||||||||| || |||||||    
T  24491645 ttgtttttaaccaataagaagagagaacaataagattgtctcaaaagttgtatcaaaagaattgttcaaatatcactgctctttt 24491561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 35008069 - 35007985
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctttt 85  Q
    |||| |||||||||| | |||||| |||||| ||||| ||||||||||||||  |||| |||||||||||||||  |||||||||    
T  35008069 ttgtgtttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagtaaaaaagttgttcaaatatcattactctttt 35007985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 42331022 - 42330918
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 260  Q
    |||||||||||||||||||||    |||||| ||||| |  ||||||||||||||||||||||||| ||  | ||| ||||||||||| |  ||||||||    
T  42331022 gagttcatctttgctccatttactcttgctcaatttatttcttttcaatgcatagatgtgtgacacttgacaaaaataaatccaaaggttgagattaaaa 42330923  T
Q  261 gatta 265  Q
    |||||    
T  42330922 gatta 42330918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 43205196 - 43205267
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaata 72  Q
    ||||||||||||||| | |||||| |||||| | ||| |||||||||||||| ||||| |||||||||||||    
T  43205196 ttgtttttgaccaatgaaaagagagcacaacaaagttgtcccaaaagttgtagcaaaaaagttgttcaaata 43205267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 3467412 - 3467348
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgaca 225  Q
    |||| ||||||||||||||||| | ||||||||||||||| |||| | | |||||||||||||||    
T  3467412 gagtgcatctttgctccattttgacttgctccatttactcctttttacttcatagatgtgtgaca 3467348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 27538900 - 27538828
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatat 73  Q
    ||||||||||||||| | |||| | |||||| ||||| |||| ||||||||| ||||| ||||||||||||||    
T  27538900 ttgtttttgaccaatgaaaagaaagcacaacaaggttgtcccgaaagttgtagcaaaaaagttgttcaaatat 27538828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 35203717 - 35203633
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctttt 85  Q
    ||||||||||||||| | |||| | |||||| ||||| |||||||| ||||| ||||| | |||||||||||||  |||||||||    
T  35203717 ttgtttttgaccaatgaaaagatagcacaacaaggttgtcccaaaaattgtagcaaaaaaattgttcaaatatcattactctttt 35203633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 17999847 - 17999917
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaat 71  Q
    ||||||||||||||| | |||| | |||||| ||||| ||||||||||| || ||||| ||||||||||||    
T  17999847 ttgtttttgaccaatgaaaagatatcacaacaaggttgtcccaaaagttatagcaaaaaagttgttcaaat 17999917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 26273277 - 26273327
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgt 51  Q
    ||||||||||||||||||||||||||||||   |||| |||||||||||||    
T  26273277 ttgtttttgaccaataagaagagaacacaatatggttgtcccaaaagttgt 26273327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 27529630 - 27529712
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    ||||||||||||||| | |||| | |||||| ||||| |||| ||||||||| ||||  |||||||||||||||  |||||||    
T  27529630 ttgtttttgaccaatgaaaagaaagcacaacaaggttgtcccgaaagttgtagcaaagaagttgttcaaatatcattactctt 27529712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 41156967 - 41156881
Alignment:
Q  5 ttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctttttaaaaa 91  Q
    ||||||||||| | |||||| |||||| |  || |||||||||||||| ||||| | |||||||||||||  ||||| |||||||||    
T  41156967 ttttgaccaatgaaaagagagcacaacaaaattgtcccaaaagttgtagcaaaaaaattgttcaaatatcattactccttttaaaaa 41156881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 18749331 - 18749258
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||||| |||||||| |||| ||||| ||| |||| || || ||||| | |||||||||||||    
T  18749331 ttgtttttgaccaataaaaagagaacgcaacaaggttgtcctaaaaattataccaaaaaatttgttcaaatatc 18749258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 40320241 - 40320298
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatg 218  Q
    |||||||||||||||||||||    |||||||||||| || |||||||||||||||||    
T  40320241 gagttcatctttgctccatttagccttgctccatttaatccttttcaatgcatagatg 40320298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 43515026 - 43515067
Alignment:
Q  33 aggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  43515026 aggttgtcccaaaagttgtaacaaaagagttgttcaaatatc 43515067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 15974709 - 15974761
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcat 213  Q
    ||||||||||||||||||||||   || || ||||||||||||||||||||||    
T  15974709 gagttcatctttgctccattttacattccttcatttactcattttcaatgcat 15974761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 38533166 - 38533086
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||||||| | || |||  ||||| ||||| |||||||| ||||| ||||||| || |||||||||| ||||||    
T  38533166 ttgtttttgaccaatgacaatagagaacaacaaggttgtcccaaaaattgtaccaaaagaattattcaaatatcactactc 38533086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 9384519 - 9384562
Alignment:
Q  42 caaaagttgtatcaaaagagttgttcaaatatcgctactctttt 85  Q
    |||||||||||| |||||||||||||||||| | ||||||||||    
T  9384519 caaaagttgtattaaaagagttgttcaaataacactactctttt 9384562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 35798312 - 35798383
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaata 72  Q
    |||||||| |||||||| |||| | |||||| ||||| |||||||| || || ||||| |||||||||||||    
T  35798312 ttgtttttaaccaataaaaagaaagcacaacaaggttgtcccaaaaattataacaaaaaagttgttcaaata 35798383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 16870585 - 16870679
Alignment:
Q  167 atctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaag 261  Q
    |||||||||||||||    || ||| ||||| || ||||||||||||||||||||||||| | | | ||| ||||||||||| |  |||||||||    
T  16870585 atctttgctccatttagccttcctcaatttattccttttcaatgcatagatgtgtgacacatagtaaaaataaatccaaaggttgagattaaaag 16870679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 40115618 - 40115700
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    ||||||||||  ||| | |||||| |||||| ||||| |||||||| |||||  |||| |||||||||||||||  |||||||    
T  40115618 ttgtttttgatgaatgaaaagagagcacaacaaggttgtcccaaaaattgtagtaaaaaagttgttcaaatatcattactctt 40115700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 42063035 - 42062997
Alignment:
Q  187 tgctccatttactcattttcaatgcatagatgtgtgaca 225  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  42063035 tgctccattcactcattttcaatgcatagatgtttgaca 42062997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 43076440 - 43076478
Alignment:
Q  42 caaaagttgtatcaaaagagttgttcaaatatcgctact 80  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  43076440 caaaagttatatcaaaagagttgttcaaatatcactact 43076478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 304960 - 304876
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctttt 85  Q
    ||||||||||||||| |||||||   ||||| | ||| || |||| ||||||||||||  |||||| ||||||| | ||||||||    
T  304960 ttgtttttgaccaatgagaagagtgaacaacaaagttgtctcaaaggttgtatcaaaatggttgttaaaatatcacaactctttt 304876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 22296093 - 22296025
Alignment:
Q  5 ttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatat 73  Q
    ||||||||||| | || ||| |||||| ||||| |||||||| |||||  |||| ||||||||||||||    
T  22296093 ttttgaccaatgaaaaaagagcacaacaaggttgtcccaaaaattgtagaaaaaaagttgttcaaatat 22296025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 42149684 - 42149632
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcat 213  Q
    |||||||||||||||||||||    || |||||||||||| ||||||||||||    
T  42149684 gagttcatctttgctccatttaacattcctccatttactccttttcaatgcat 42149632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 159 - 282
Target Start/End: Complemental strand, 41459509 - 41459386
Alignment:
Q  159 acgagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaa 258  Q
    ||||||||||||||||||||||| | |||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41459509 acgagttcatctttgctccatttatgtttgttcaatttactcattttcaatacatagatgtgtgacacgtggaacaaacaaatccaaagactatgattaa 41459410  T
Q  259 aagattagaaataagtattgttac 282  Q
    ||||||||||||||||||||||||    
T  41459409 aagattagaaataagtattgttac 41459386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 41564848 - 41564765
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttt 84  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||| |||||||||    
T  41564848 ttgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtaccaaaagagttgttcaaatatcactactcttt 41564765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 23399957 - 23399876
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactct 82  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||| ||||||| |||||||    
T  23399957 ttgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtaccaaaagagttgtttaaatatcactactct 23399876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 29094712 - 29094643
Alignment:
Q  5 ttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||    
T  29094712 ttttgaccaataagaagagaacacaataaggttgtcccaaaagttgtatcaaaagagttgttcaaatatc 29094643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 48962089 - 48962162
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||    
T  48962089 ttgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtaccaaaagagttgttcaaatatc 48962162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 12990449 - 12990373
Alignment:
Q  5 ttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  12990449 ttttgacaaataaaaagagaacacaacaaggttgtcccaaaagttgtatcaaaagagttgttcaaatatcactactc 12990373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 29638818 - 29638898
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||||||||||||||||||||||| |  || |||||||| ||||| ||||||||||||||||||||| ||||||    
T  29638818 ttgtttttgaccaataagaagagaacacaacaaaattgtcccaaaaattgtaccaaaagagttgttcaaatatcactactc 29638898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30414967 - 30415032
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgtt 66  Q
    ||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||||||||    
T  30414967 ttgtttttgaccaataagaagagaacacaacaagattgtcccaaaagttgtaccaaaagagttgtt 30415032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 37947188 - 37947115
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| ||||||||  ||||| ||||| |||||||||||||| ||||| |||||||||||||||    
T  37947188 ttgtttttgaccaatgagaagagagaacaacaaggttgtcccaaaagttgtaacaaaatagttgttcaaatatc 37947115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 40240079 - 40240007
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatat 73  Q
    ||||||||||||||| | |||| | |||||| ||||| |||||||||||||| ||||| ||||||||||||||    
T  40240079 ttgtttttgaccaatgaaaagatagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgttcaaatat 40240007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 51666863 - 51666942
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctact 80  Q
    ||||||||||||||||| |||||| |||||| |  ||||||||||| || || ||||| ||||||||||||||| |||||    
T  51666863 ttgtttttgaccaataaaaagagagcacaacaatattatcccaaaaattatagcaaaatagttgttcaaatatcactact 51666942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 835980 - 836054
Alignment:
Q  7 ttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||| ||||||||| | ||| || || |||||||||||||| ||||||||||||||||||| | ||||||    
T  835980 ttgaccaatgagaagagaaaataacaagattgtcccaaaagttgtaccaaaagagttgttcaaataacactactc 836054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 12972674 - 12972592
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    ||||||||||||||||| || |||||||||| |  || ||| ||||||| || ||||||| ||||||||||||| ||||||||    
T  12972674 ttgtttttgaccaataaaaaaagaacacaacaaaattgtcctaaaagttataccaaaagaattgttcaaatatcactactctt 12972592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 5574243 - 5574162
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactct 82  Q
    ||||||||||||||||| || |||||||||  | ||| |||||||| || ||||||| || ||||||||||||| |||||||    
T  5574243 ttgtttttgaccaataaaaaaagaacacaataaagttgtcccaaaaattatatcaaacgaattgttcaaatatcactactct 5574162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8577470 - 8577397
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| |||| |||  ||||| ||||| ||||||||||| || ||||| |||||||||||||||    
T  8577470 ttgtttttgaccaatgagaatagagaacaacaaggttgtcccaaaagttataccaaaatagttgttcaaatatc 8577397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 31244703 - 31244630
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| ||||||||  |||||  |||| ||||||| |||||| ||||| |||||||||||||||    
T  31244703 ttgtttttgaccaatgagaagagagaacaacatggttgtcccaaatgttgtaccaaaatagttgttcaaatatc 31244630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26760665 - 26760736
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaata 72  Q
    ||||||||||||||||| |||||| |||||| ||||| || |||||||| || ||||| ||||||| |||||    
T  26760665 ttgtttttgaccaataaaaagagagcacaacaaggttgtctcaaaagttataacaaaaaagttgtttaaata 26760736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 271
Target Start/End: Complemental strand, 46178230 - 46178120
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 260  Q
    |||| |||||||||||||||| |    ||||||||||| | | |||| ||||||||| | |||||||||| | |||||||  ||||||||  ||||||||    
T  46178230 gagtgcatctttgctccatttatgagagctccatttacacctgttcactgcatagatttatgacacgtggcaaaaacaaaatcaaaggctcagattaaaa 46178131  T
Q  261 gattagaaata 271  Q
    ||||| |||||    
T  46178130 gattaaaaata 46178120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 46903573 - 46903659
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttttta 87  Q
    ||||||||||||||| ||||||||  ||||| | ||| || |||| |||||| |||||  |||||| ||||||| ||||||||||||    
T  46903573 ttgtttttgaccaatgagaagagagaacaacaaagttgtctcaaaggttgtaccaaaatggttgttaaaatatcactactcttttta 46903659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 48336423 - 48336350
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    |||| |||||||||||||||| ||  ||| | ||||| ||| |||||||||| ||||| |||||||||||||||    
T  48336423 ttgtgtttgaccaataagaagggagaacatcaaggttgtccaaaaagttgtaacaaaatagttgttcaaatatc 48336350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 7338875 - 7338767
Alignment:
Q  153 aaaaatacgagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctat 252  Q
    ||||||| |||| |||||||||||||||| | ||| ||| ||||||||  ||||||  ||||||||||| ||| |||||| ||| |||  ||| || | |    
T  7338875 aaaaatatgagtccatctttgctccatttatgtttcctcaatttactccatttcaagtcatagatgtgtaacatgtggaaaaaataaaatcaatggttgt 7338776  T
Q  253 gattaaaag 261  Q
    |||||||||    
T  7338775 gattaaaag 7338767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 22674803 - 22674873
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||| || ||||||||| ||||| |  |||| |||||||||||| ||||| | |||||||||||||    
T  22674803 tttttgaccgatgagaagagaaaacaacaaaattattccaaaagttgtaccaaaaaaattgttcaaatatc 22674873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 27954331 - 27954413
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    ||||||||||||||| ||||||||  ||||| | ||| | |||||| ||||   |||||| ||||||||||||| ||||||||    
T  27954331 ttgtttttgaccaatgagaagagagaacaacaaagttgttccaaaaattgtgctaaaagaattgttcaaatatcactactctt 27954413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 40118679 - 40118601
Alignment:
Q  5 ttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    |||| |||||||| |||| | |||||| ||||| |||||||| ||||| ||||| | |||||||||||||  |||||||    
T  40118679 ttttaaccaataaaaagaaagcacaacaaggttgtcccaaaaattgtagcaaaaaaattgttcaaatatcattactctt 40118601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 1100320 - 1100400
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||| ||||||||| |||||| |  | ||| ||||| || |||||||||||  |||||||||||||||||| | ||||||    
T  1100320 ttgttattgaccaatgagaagaaagaataacaaggttgtcacaaaagttgtactaaaagagttgttcaaataacactactc 1100400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 11897283 - 11897359
Alignment:
Q  7 ttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    ||||||||||||||| ||  | | | ||||| || ||||| ||||| |||||||||||||||||||||  |||||||    
T  11897283 ttgaccaataagaagggagaatatcaaggttgtcacaaaaattgtaacaaaagagttgttcaaatatcattactctt 11897359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 30430493 - 30430437
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagat 217  Q
    |||||||||||||||||||||    || |||||||||||| ||| ||||||||||||    
T  30430493 gagttcatctttgctccatttagtattcctccatttactcctttccaatgcatagat 30430437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25430749 - 25430830
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactct 82  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| |||||||    
T  25430749 ttgtttttgaccaataagaagagaacacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactct 25430830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 34838238 - 34838165
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||||||    
T  34838238 ttgtttttgaccaataagaagagaacacaacaaggttgtcctaaaagttgtaccaaaagagttgttcaaatatc 34838165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 28713196 - 28713279
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttt 84  Q
    ||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||| |||||||||    
T  28713196 ttgttttcgaccaataagaagagaatacaacaaggttgtcccaaaaattgtaccaaaagagttgttcaaatatcactactcttt 28713279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 28720543 - 28720626
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttt 84  Q
    ||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||| |||||||||    
T  28720543 ttgttttcgaccaataagaagagaatacaacaaggttgtcccaaaaattgtaccaaaagagttgttcaaatatcactactcttt 28720626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 28728185 - 28728268
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttt 84  Q
    ||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||| |||||||||    
T  28728185 ttgttttcgaccaataagaagagaatacaacaaggttgtcccaaaaattgtaccaaaagagttgttcaaatatcactactcttt 28728268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 4148623 - 4148542
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactct 82  Q
    ||||||||||||||||||||| ||||||||  ||||| |||||||||||||| ||||||||| ||||||||||| |||||||    
T  4148623 ttgtttttgaccaataagaagggaacacaataaggttgtcccaaaagttgtaccaaaagagtcgttcaaatatcactactct 4148542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 18550082 - 18550155
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    |||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||    
T  18550082 ttgtttttgatcaataagaagagaacacaacaaggttgtcccaaaagttgtaccaaaatagttgttcaaatatc 18550155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 21649135 - 21649053
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttttt 86  Q
    |||||||||||||| |||||| |||||| ||||| |||||||||||||| ||||| |||||||||||||||  ||||||||||    
T  21649135 tttttgaccaataaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactcttttt 21649053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27300449 - 27300522
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||||||||||||| ||||| || || |||||||||||||| | |||||||||||||||||||    
T  27300449 ttgtttttgaccaataagaagagaatacaacaagattgtcccaaaagttgtaccgaaagagttgttcaaatatc 27300522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 41776278 - 41776363
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttttt 86  Q
    ||||||||||||||| | |||||| |||||| ||||| |||||||||||||| ||||| |||||||||||||||  ||||||||||    
T  41776278 ttgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactcttttt 41776363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 22836107 - 22836023
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctttt 85  Q
    ||||||||||||||| | |||||| |||||| |||||||||||||| ||||| ||||| |||||||||||||||  |||||||||    
T  22836107 ttgtttttgaccaatgaaaagagagcacaacaaggttatcccaaaaattgtagcaaaaaagttgttcaaatatcattactctttt 22836023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 40030599 - 40030495
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 260  Q
    |||||||||||||||||||||    |||||| ||||| || ||||||||||||||||||||||||| ||  | ||| |||||||||||||  ||||||||    
T  40030599 gagttcatctttgctccatttactcttgctcaatttattccttttcaatgcatagatgtgtgacacttgacaaaaataaatccaaaggctgagattaaaa 40030500  T
Q  261 gatta 265  Q
    |||||    
T  40030499 gatta 40030495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 22203183 - 22203110
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | |||||| |||||| ||||| |||||||||||||| ||||| |||||||||||||||    
T  22203183 ttgtttttgaccaatcaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgttcaaatatc 22203110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 35701811 - 35701742
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaa 70  Q
    ||||||||||||||||||||||||||| ||| || || |||||||||||||| ||||||| |||||||||    
T  35701811 ttgtttttgaccaataagaagagaacataacaagattgtcccaaaagttgtaccaaaagaattgttcaaa 35701742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 37471746 - 37471828
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    ||||||||||||||| | |||||| |||||| || || |||||||||||||| ||||| |||||||||||||||  |||||||    
T  37471746 ttgtttttgaccaatgaaaagagagcacaacaagattgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactctt 37471828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8233464 - 8233391
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| ||||||||  ||||| ||||||||| ||||||||||  |||| || ||||||||||||    
T  8233464 ttgtttttgaccaatgagaagagagaacaacaaggttatccaaaaagttgtacaaaaatagatgttcaaatatc 8233391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 34247877 - 34247950
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | ||||||  ||||| ||||| ||||||||||||| ||||||| ||||| ||||||||    
T  34247877 ttgtttttgaccaatgaaaagagagaacaacaaggttgtcccaaaagttgtctcaaaagggttgtacaaatatc 34247950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42651023 - 42651096
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    |||||||| |||||| ||||||||  ||||| ||||| || ||||||||||| ||||| |||||||||||||||    
T  42651023 ttgtttttaaccaatgagaagagagaacaacaaggttgtctcaaaagttgtaccaaaatagttgttcaaatatc 42651096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 1422638 - 1422597
Alignment:
Q  33 aggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  1422638 aggttgtcccaaaagttgtatcaaaatagttgttcaaatatc 1422597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 20169082 - 20168982
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 260  Q
    |||| |||||||||||||||| |  ||||||||||||||| |||| ||| || |||| ||||||| |||| | ||| ||||| ||||||||  |||||||    
T  20169082 gagtgcatctttgctccatttatgattgctccatttactcctttttaattcacagatatgtgacatgtggca-aaaaaaatctaaaggctacaattaaaa 20168984  T
Q  261 ga 262  Q
    ||    
T  20168983 ga 20168982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 23265321 - 23265248
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||||| |||||| |||||| |  || || ||||||||||| ||||| ||||||| |||||||    
T  23265321 ttgtttttgaccaataaaaagagagcacaacaaaattgtcgcaaaagttgtaacaaaaaagttgtttaaatatc 23265248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 13924116 - 13924184
Alignment:
Q  5 ttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatat 73  Q
    |||| |||||| ||||||||  ||||| || || || ||||||||||| ||||||||||||||||||||    
T  13924116 ttttaaccaatgagaagagaggacaacaagattgtcacaaaagttgtaccaaaagagttgttcaaatat 13924184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 13017081 - 13017156
Alignment:
Q  157 atacgagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaa 232  Q
    |||||||| |||||||||||||||| |    ||||||||||| | | |||| ||||||||||| ||||||||||||    
T  13017081 atacgagtgcatctttgctccatttatgagagctccatttacacctgttcactgcatagatgtatgacacgtggaa 13017156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 23709079 - 23709150
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaata 72  Q
    ||||| ||||||||| | |||||| || ||| ||||| |||||||| ||||| ||||| |||||||||||||    
T  23709079 ttgttcttgaccaatgaaaagagagcataacaaggttgtcccaaaaattgtagcaaaaaagttgttcaaata 23709150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 271
Target Start/End: Complemental strand, 13017852 - 13017742
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 260  Q
    |||| |||||||||||||||| |    ||||||||||| | | |||| ||||||||| | ||||| |||| | |||||||  ||||||||  ||||||||    
T  13017852 gagtgcatctttgctccatttatgagagctccatttacacctgttcactgcatagatttatgacatgtggcaaaaacaaaatcaaaggctcagattaaaa 13017753  T
Q  261 gattagaaata 271  Q
    ||||| |||||    
T  13017752 gattaaaaata 13017742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 33692827 - 33692897
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    |||||||||||| | |||||| |||||| | ||| |||||||| || || ||||| |||||||||||||||    
T  33692827 tttttgaccaatgaaaagagagcacaacaaagttgtcccaaaaattataacaaaaaagttgttcaaatatc 33692897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 44001159 - 44001245
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttttta 87  Q
    |||| |||||||||||||||| ||  ||| | ||||| ||| ||||  |||| |||||||||||||||||||||  |||||| ||||    
T  44001159 ttgtatttgaccaataagaagggagaacatcaaggttgtccaaaaaaatgtaacaaaagagttgttcaaatatcattactctattta 44001245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 34578305 - 34578232
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    |||||||||| |||||||||||||  ||||| | ||| |||||||| || || ||||| ||||||| |||||||    
T  34578305 ttgtttttgatcaataagaagagagaacaacaaagttgtcccaaaaattataccaaaatagttgttaaaatatc 34578232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 145150 - 145230
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  145150 ttgtttttgaccaataagaagagaacacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 145230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 34693184 - 34693104
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||||||    
T  34693184 ttgtttttgaccaataagaagagaacacaacaaggttatcctaaaagttgtatcaaaagagttattcaaatatcactactc 34693104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 39032572 - 39032492
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||    
T  39032572 ttgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtatcaaaagagttgttcaaatatcactactc 39032492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 37821109 - 37821022
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctttttaa 88  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||| |||||||| ||||    
T  37821109 ttgtttttgaccaataagaagagaacacaacaaggttgtcccaaaagttgtaccaaaatagttgttcaaatatcactactcttattaa 37821022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 18729245 - 18729164
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactct 82  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||  |||||||    
T  18729245 ttgtttttgaccaataaaaagagaacacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatattactactct 18729164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 21771438 - 21771357
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctttt 85  Q
    |||||||||||||| |||| |||||||| ||||| ||||||||||| || ||||||||||||||||||||| ||||||||||    
T  21771438 tttttgaccaataaaaagataacacaacaaggttgtcccaaaagttataccaaaagagttgttcaaatatcactactctttt 21771357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 14126517 - 14126597
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||||| | || ||||||||||||||||||||| ||||||    
T  14126517 ttgtttttgaccaataagaagagaacacatcaaggttgtcccaaaagctctaccaaaagagttgttcaaatatcactactc 14126597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 35616769 - 35616689
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||||||||||||||||  ||||| ||||| |||||||| || || ||||| ||||||||||||||| ||||||    
T  35616769 ttgtttttgaccaataagaagagagaacaacaaggttgtcccaaaatttataccaaaatagttgttcaaatatcactactc 35616689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 38919952 - 38920028
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctact 80  Q
    |||||||||||| ||||||||  ||||| ||||| ||| |||||||||| ||||||||||||||||||||| |||||    
T  38919952 tttttgaccaatgagaagagagaacaacaaggttgtcctaaaagttgtaccaaaagagttgttcaaatatctctact 38920028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 17574192 - 17574106
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttttta 87  Q
    ||||||||||||| | |||||| |  ||||| ||||| |||||||||||||| ||||| |||||||||||||||  |||||||||||    
T  17574192 ttgtttttgaccagtgagaagaaagaacaacaaggttgtcccaaaagttgtaccaaaatagttgttcaaatatcattactcttttta 17574106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 12612985 - 12612912
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| ||||||||  ||||| ||||| |||||||||||||| |||||  ||||||||||||||    
T  12612985 ttgtttttgaccaatgagaagagagaacaacaaggttgtcccaaaagttgtaccaaaatggttgttcaaatatc 12612912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 25585424 - 25585352
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatat 73  Q
    |||||||||| |||||| |||| |||||||| | ||| |||||||||||||| ||||| ||||||||||||||    
T  25585424 ttgtttttgatcaataaaaagataacacaacaaagttctcccaaaagttgtaacaaaatagttgttcaaatat 25585352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 2398321 - 2398221
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 260  Q
    ||||||||||||||||||||||| |||||| ||||||||| |||| | |  | |||||||||||| |||| | || |||||| |||||||  ||||||||    
T  2398321 gagttcatctttgctccatttttgtttgcttcatttactcttttt-agtttacagatgtgtgacatgtggtaaaatcaaatctaaaggctgagattaaaa 2398223  T
Q  261 ga 262  Q
    ||    
T  2398222 ga 2398221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6458870 - 6458943
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | |||||| |||||| ||||| |||||||| || || ||||| |||||||||||||||    
T  6458870 ttgtttttgaccaattaaaagagagcacaacaaggttgtcccaaaaattatagcaaaaaagttgttcaaatatc 6458943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 31607253 - 31607346
Alignment:
Q  158 tacgagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggcta 251  Q
    ||||||||||||||||||||||||    || |||||||||||| |||||||||||| |||   |||||| ||||| ||| |||||||| |||||    
T  31607253 tacgagttcatctttgctccatttaacgttcctccatttactccttttcaatgcatggataaatgacacatggaaaaaataaatccaagggcta 31607346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42364532 - 42364605
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | |||| |||||||| ||||| |||||||||||||   |||| |||||||||||||||    
T  42364532 ttgtttttgaccaatgaaaagataacacaacaaggttgtcccaaaagttgttggaaaaaagttgttcaaatatc 42364605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 14522932 - 14522861
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaata 72  Q
    ||||||||||||||||| |||| | |||||  || || |||||||||||||| ||||| |||||||||||||    
T  14522932 ttgtttttgaccaataaaaagatagcacaataagattgtcccaaaagttgtagcaaaaaagttgttcaaata 14522861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 259
Target Start/End: Original strand, 33432924 - 33433022
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaa 259  Q
    |||||||||||||||||||||  | ||||||||||||| | |  ||| |||||||||| ||||||||||| | ||| |||| ||| ||||  |||||||    
T  33432924 gagttcatctttgctccatttacacttgctccatttacccctgctcagtgcatagatgagtgacacgtggcaaaaataaattcaagggctgggattaaa 33433022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 36899446 - 36899376
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    |||||||| ||||| ||||||||| ||| || || | |||||||||||| ||||| |||||||||||||||    
T  36899446 tttttgactaataaaaagagaacaaaacaagattgttccaaaagttgtaccaaaatagttgttcaaatatc 36899376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 35924376 - 35924457
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctttt 85  Q
    |||||||| ||||| ||||||  ||||| ||||| || ||||| |||| ||||||||||||| ||||||||  |||||||||    
T  35924376 tttttgacaaataaaaagagagaacaacaaggttgtctcaaaaattgtttcaaaagagttgtacaaatatcattactctttt 35924457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 43153028 - 43152955
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| ||||||||  ||||| | ||| ||| || ||||||| ||||| |||||||||||||||    
T  43153028 ttgtttttgaccaatgagaagagagaacaacaaagttgtcctaagagttgtaccaaaatagttgttcaaatatc 43152955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 2117567 - 2117520
Alignment:
Q  42 caaaagttgtatcaaaagagttgttcaaatatcgctactctttttaaaa 90  Q
    ||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  2117567 caaaagttgtatcaaat-agttgttcaaatatcactactctttttaaaa 2117520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 12203252 - 12203320
Alignment:
Q  5 ttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatat 73  Q
    |||| |||||| ||||||||  ||||| || || || ||||||||||| ||||||||||||||||||||    
T  12203252 ttttaaccaatgagaagagaggacaacaagattgtcacaaaagttgtaccaaaagagttgttcaaatat 12203320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 261
Target Start/End: Complemental strand, 33530762 - 33530668
Alignment:
Q  167 atctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaag 261  Q
    |||||||||||||||    || ||| ||||| || ||||||||||||||||||||||||| | | | ||| ||||||||||| |  |||||||||    
T  33530762 atctttgctccatttagccttcctcaatttattccttttcaatgcatagatgtgtgacacatagtaaaaataaatccaaaggttgagattaaaag 33530668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9940157 - 9940230
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | ||||||  ||||| | ||| ||| |||| ||||||||||| |||| ||||||||||    
T  9940157 ttgtttttgaccaatgaaaagagagaacaacaaagttgtcctaaaaattgtatcaaaatagttattcaaatatc 9940230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33893689 - 33893762
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||| ||| | |||| | |||||| ||||| ||||||||||||||  |||| | |||||||||||||    
T  33893689 ttgtttttgacaaatgaaaagatagcacaacaaggttgtcccaaaagttgtagtaaaaaaattgttcaaatatc 33893762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 35595954 - 35595881
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | || ||| |||||| || || |||||||| |||||  |||| |||||||||||||||    
T  35595954 ttgtttttgaccaatgaaaaaagagcacaacaagattgtcccaaaaattgtaataaaaaagttgttcaaatatc 35595881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 36110240 - 36110320
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttt 84  Q
    |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||    
T  36110240 tttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtatcaaaagagttgttcaaatatcactactcttt 36110320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 50291385 - 50291468
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttt 84  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| | |||||||||    
T  50291385 ttgtttttgaccaataagaagagaacacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaataacactactcttt 50291468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 18944389 - 18944469
Alignment:
Q  2 tgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactct 82  Q
    |||||||||||||||||||||||||||||  ||||| |||||||||||||| ||||||||||||||||||||| |||||||    
T  18944389 tgtttttgaccaataagaagagaacacaataaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactct 18944469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 38960625 - 38960548
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    |||||||||||||||||||||||||||| || || |||||||| ||||||||||||||||||||||||||| ||||||    
T  38960625 tttttgaccaataagaagagaacacaacaagattgtcccaaaaattgtatcaaaagagttgttcaaatatcactactc 38960548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 31414076 - 31414144
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtg 229  Q
    ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||    
T  31414076 gagttcatctttgctccatttatgtttgctccatttgctcattttcaatgcatagatgtgtgacacgtg 31414144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 39699431 - 39699356
Alignment:
Q  5 ttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctact 80  Q
    ||||||||||||||||||||||||||  ||||| | |||||||||||||||||||||||||||||||||| |||||    
T  39699431 ttttgaccaataagaagagaacacaataaggttgttccaaaagttgtatcaaaagagttgttcaaatatcactact 39699356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 21766650 - 21766723
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||    
T  21766650 ttgtttttaaccaataagaagagaacacaacaaggttgtcccaaaagttataccaaaagagttgttcaaatatc 21766723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 8614285 - 8614367
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    |||||||||||||||||||||| |||||||| ||||| |||||||| |||||  |||| ||||||||||||||| ||||||||    
T  8614285 ttgtttttgaccaataagaagaaaacacaacaaggttgtcccaaaaattgtacaaaaaaagttgttcaaatatcactactctt 8614367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 32294720 - 32294638
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    ||||||||||| |||||||| |||||||||| ||||| |||||||| || || ||||||||||||||||||||| ||||||||    
T  32294720 ttgtttttgacgaataagaaaagaacacaacaaggttgtcccaaaaattataccaaaagagttgttcaaatatcactactctt 32294638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4878070 - 4878143
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | |||||| |||||| ||||| |||||||||||||| ||||| |||||||||||||||    
T  4878070 ttgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgttcaaatatc 4878143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 22893971 - 22894044
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||||| |||||| |||||| || || |||||||||||||| ||||| |||||||||||||||    
T  22893971 ttgtttttgaccaataaaaagagagcacaacaagattgtcccaaaagttgtagcaaaaaagttgttcaaatatc 22894044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 22945639 - 22945712
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||||| |||||| |||||| || || |||||||||||||| ||||| |||||||||||||||    
T  22945639 ttgtttttgaccaataaaaagagagcacaacaagattgtcccaaaagttgtagcaaaaaagttgttcaaatatc 22945712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33776997 - 33777070
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||||| ||||||  ||||| |||||||||||||| ||||| ||||| |||||||||||||||    
T  33776997 ttgtttttgaccaataaaaagagagaacaacaaggttatcccaaaaattgtaccaaaatagttgttcaaatatc 33777070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 17869644 - 17869733
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggct 250  Q
    |||||||||||||||||||||    ||||||||||||||| |||||||||||||||||  |||||| ||| | ||| |||||||| ||||    
T  17869644 gagttcatctttgctccatttagccttgctccatttactccttttcaatgcatagatgcatgacacatggtaaaaataaatccaagggct 17869733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 45678366 - 45678439
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||||| ||||||  ||||| ||||| | |||||||||||| ||||| |||||||||||||||    
T  45678366 ttgtttttgaccaataaaaagagagaacaacaaggttgtaccaaaagttgtaccaaaatagttgttcaaatatc 45678439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 46791959 - 46791886
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    |||||||||| |||| || |||||  |||| |||||| || |||||||||||||||||||||||||||||||||    
T  46791959 ttgtttttgatcaatgagtagagagaacaatgaggttgtctcaaaagttgtatcaaaagagttgttcaaatatc 46791886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 8487741 - 8487821
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttt 84  Q
    |||||||||||||| |||||| |||||| ||||| || ||||||||||| ||||| | |||||||||||||  ||||||||    
T  8487741 tttttgaccaataaaaagagagcacaacaaggttgtctcaaaagttgtagcaaaaaaattgttcaaatatcattactcttt 8487821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 24310489 - 24310405
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctttt 85  Q
    ||||||||||| ||||| || ||| |||||| ||||| |||||||||||||| ||||| | |||||||||||||  |||||||||    
T  24310489 ttgtttttgactaataaaaaaagagcacaacaaggttgtcccaaaagttgtagcaaaaaaattgttcaaatatcattactctttt 24310405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 44095304 - 44095368
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgaca 225  Q
    |||||||||||||||||||||| |||| |||||||||||| |||||||||   ||||||||||||    
T  44095304 gagttcatctttgctccattttgatttcctccatttactccttttcaatgtgcagatgtgtgaca 44095368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 1728057 - 1727979
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctac 79  Q
    |||||||||||||||||||||| |||||||| ||||| |||||||| |||||  |||| | || |||||||||| ||||    
T  1728057 ttgtttttgaccaataagaagaaaacacaacaaggttgtcccaaaaattgtactaaaaaaattattcaaatatcactac 1727979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 31413751 - 31413681
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    |||||||||||||| |||||| |||||| ||||| || ||||| ||||| ||||| |||||||||||||||    
T  31413751 tttttgaccaataaaaagagagcacaacaaggttgtcacaaaacttgtagcaaaaaagttgttcaaatatc 31413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 19807386 - 19807313
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    |||||||||| ||||||||||| | |||||| ||||| |||||||| |||||  |||| |||||||||||||||    
T  19807386 ttgtttttgatcaataagaagatatcacaacaaggttgtcccaaaaattgtacaaaaaaagttgttcaaatatc 19807313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 4577670 - 4577749
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttt 84  Q
    ||||| |||||| | |||||| |||||| ||||| |||||||||||||| ||||| |||||||||||||||  ||||||||    
T  4577670 ttttttaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaa-agttgttcaaatatcattactcttt 4577749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 43307332 - 43307261
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatat 73  Q
    |||||||| |||||||| |||||| |||||| |||||||||||||| |||||  |||| ||||||||||||||    
T  43307332 ttgtttttaaccaataaaaagagagcacaacaaggttatcccaaaaattgta-aaaaaaagttgttcaaatat 43307261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 1868858 - 1868779
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    ||||| |||||||| || ||| |||||| ||||| ||||||||||||||  |||| |||||||||||||||  |||||||    
T  1868858 tttttaaccaataaaaaaagagcacaacaaggttgtcccaaaagttgtagtaaaaaagttgttcaaatatcattactctt 1868779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 9096040 - 9096124
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttttt 86  Q
    ||||||||||||||||| || |  | ||||| ||||| | |||||||||||||||||| | |||||||||||||  ||||||||||    
T  9096040 ttgtttttgaccaataaaaaaaaga-acaacaaggttgtaccaaaagttgtatcaaaataattgttcaaatatcattactcttttt 9096124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 43983000 - 43983073
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| ||||||||  ||||| || || ||| |||||||||| |||||  ||||||||||||||    
T  43983000 ttgtttttgaccaatgagaagagagaacaactagattgtcctaaaagttgtaccaaaatggttgttcaaatatc 43983073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 53781805 - 53781732
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | |||||| || ||| ||||| |||||||||||||| || || ||||||| |||||||    
T  53781805 ttgtttttgaccaatgaaaagagagcataacaaggttgtcccaaaagttgtagcacaaaagttgttgaaatatc 53781732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 27860983 - 27861019
Alignment:
Q  189 ctccatttactcattttcaatgcatagatgtgtgaca 225  Q
    |||||||||||| ||||||||||||||||||||||||    
T  27860983 ctccatttactccttttcaatgcatagatgtgtgaca 27861019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 36848379 - 36848347
Alignment:
Q  42 caaaagttgtatcaaaagagttgttcaaatatc 74  Q
    |||||||||||||||||||||||||||||||||    
T  36848379 caaaagttgtatcaaaagagttgttcaaatatc 36848347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 47998730 - 47998781
Alignment:
Q  35 gttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttttta 87  Q
    |||||| |||||||||||||||| || ||||||||||||| ||||||||||||    
T  47998730 gttatcacaaaagttgtatcaaatga-ttgttcaaatatcactactcttttta 47998781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 2924423 - 2924505
Alignment:
Q  165 tcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaag 247  Q
    ||||||||||||||||||  ||  |||||||||||| |||| ||| || |||||  || || |||||| ||||||||||||||    
T  2924423 tcatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgtcatgtggaaaaaacaaatccaaag 2924505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23133517 - 23133471
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaag 47  Q
    |||||||||| |||||||||||||||||||| || || |||||||||    
T  23133517 ttgtttttgatcaataagaagagaacacaacaagattgtcccaaaag 23133471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 42915187 - 42915102
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttttta 87  Q
    |||||||| |||||| | ||||||  | || || ||| || ||||||||||||||||  ||||||||||||||| ||||||||||||    
T  42915187 ttgtttttaaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaat-agttgttcaaatatcactactcttttta 42915102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 29555809 - 29555729
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  29555809 ttgtttttgactaataagaagagaacacaacaaggttgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 29555729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 14839013 - 14838931
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||| ||||||||    
T  14839013 ttgtttttgaccaataaaaagagaacacaacaaggttgtcccaaaaattgtaccaaaagagttgttcaaatatcactactctt 14838931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 44689906 - 44689989
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttt 84  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||||||||  ||||||| ||||||||||||| |||||||||    
T  44689906 ttgtttttgaccaataaaaagagaacacaacaaggttgtcccaaaagttgttccaaaagaattgttcaaatatcactactcttt 44689989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 7351603 - 7351525
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactct 82  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||| | ||||| |||||||||||| ||| |||||||    
T  7351603 tttttgaccaataagaagagaacacaacaaggttttcccaaaagttatttcaaatgagttgttcaaaaatcactactct 7351525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 9027716 - 9027808
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttt-ttaaaaat 92  Q
    ||||||||||||||||||||||||  ||||| ||||| | |||||||||||| ||||| |||||||||||||||  |||||||| ||||||||    
T  9027716 ttgtttttgaccaataagaagagagaacaacaaggttgtaccaaaagttgtaccaaaatagttgttcaaatatcattactctttcttaaaaat 9027808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 48117439 - 48117521
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    ||||||||||||||| | |||||| |||||| ||||| |||||||||||||| ||||| |||||||||||||||  |||||||    
T  48117439 ttgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactctt 48117521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 43149311 - 43149238
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||||||||||||  ||||| ||||| | |||||||||||| ||||| |||||||||||||||    
T  43149311 ttgtttttgaccaataagaagagagaacaacaaggttgtaccaaaagttgtaccaaaatagttgttcaaatatc 43149238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 30664604 - 30664687
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttt 84  Q
    ||||||||||||||||| ||||||||||||| |  || | |||||||||||| ||||| |||| |||||||||| |||||||||    
T  30664604 ttgtttttgaccaataaaaagagaacacaacaaaattgttccaaaagttgtaccaaaaaagttattcaaatatcactactcttt 30664687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 32151996 - 32152069
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    |||||||| |||||||||||||||||||||| | ||| ||| |||| ||||| ||||| |||||||||||||||    
T  32151996 ttgtttttaaccaataagaagagaacacaacaaagttgtcctaaaaattgtaccaaaaaagttgttcaaatatc 32152069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 9159004 - 9158936
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaa 69  Q
    ||||||||||||||| | |||||| |||||| ||||| |||||||||||||| ||||| ||||||||||    
T  9159004 ttgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgttcaa 9158936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 29846859 - 29846777
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    |||||||| |||||  | |||||| |||||| ||||| |||||||||||||| ||||| |||||||||||||||  |||||||    
T  29846859 ttgttttttaccaacgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgttcaaatatcattactctt 29846777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 161 - 251
Target Start/End: Original strand, 40613055 - 40613145
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggcta 251  Q
    |||||||||||||||||||||    || ||||||||| || |||| ||||||||||||| ||||| |||||| ||||||||| || |||||    
T  40613055 gagttcatctttgctccatttaaccttactccatttaatccttttgaatgcatagatgtttgacatgtggaaaaaacaaatctaatggcta 40613145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 40821810 - 40821740
Alignment:
Q  19 aagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctttttaaa 89  Q
    |||||| |||||| ||||| ||||||||||||||  |||| |||||||||||||||  |||||||||||||    
T  40821810 aagagagcacaacaaggttgtcccaaaagttgtagtaaaaaagttgttcaaatatcattactctttttaaa 40821740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 35368714 - 35368799
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttttt 86  Q
    |||||||| |||||| | |||||| |||||| || || |||||||||||||| ||||  |||||||||||||||  ||||||||||    
T  35368714 ttgttttttaccaatgaaaagagagcacaacaagattgtcccaaaagttgtagcaaacaagttgttcaaatatcattactcttttt 35368799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 44636976 - 44637047
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatag--atgtgtgacacgtgg 230  Q
    ||||||||||||||||||||||  ||| ||| |||||||| |||| |||||||||  |||||||||||||||    
T  44636976 gagttcatctttgctccattttactttactctatttactcctttttaatgcatagatatgtgtgacacgtgg 44637047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 55264923 - 55264999
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctact 80  Q
    |||||||||||||||||||||| ||||  | ||| |||||||| || |||||||| | ||||||||||||| |||||    
T  55264923 tttttgaccaataagaagagaatacaataaagttgtcccaaaaattatatcaaaaaaattgttcaaatatcactact 55264999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 21481867 - 21481949
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttt 84  Q
    ||||||||||||||| ||||||||  |||| |||||| || |||||||||||| || || |||||||||||||| || ||||||    
T  21481867 ttgtttttgaccaatgagaagagagaacaatgaggttgtctcaaaagttgtataaatag-gttgttcaaatatcactcctcttt 21481949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 19251703 - 19251772
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtgg 230  Q
    |||||||||||| ||||||||  | ||||||||||||| | | |||| |||||||||| |||||||||||    
T  19251703 gagttcatctttactccatttacacttgctccatttacccctgttcagtgcatagatgagtgacacgtgg 19251772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 29057755 - 29057824
Alignment:
Q  5 ttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    |||| |||||| | |||||| |||||| ||||| |||||||||||||| ||||| | |||||||||||||    
T  29057755 ttttaaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaaattgttcaaatatc 29057824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33971986 - 33972059
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    |||||||| |||||| ||||||||  ||||| ||||| || ||||| ||||| ||||| |||||||||||||||    
T  33971986 ttgtttttaaccaatgagaagagagaacaacaaggttgtctcaaaaattgtaccaaaatagttgttcaaatatc 33972059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 42888740 - 42888668
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||||| ||||||||||| | |||||  ||||||| || || ||||| |||||||||||||||    
T  42888740 ttgtttttgaccaataaaaagagaacacagcaaggtt-gcccaaaaattataacaaaaaagttgttcaaatatc 42888668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 43894953 - 43894880
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | |||||| |||||| | ||| |||||||| || || ||||| |||||||||||||||    
T  43894953 ttgtttttgaccaatgaaaagagagcacaacaaagttgtcccaaaaattatagcaaaaaagttgttcaaatatc 43894880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 44637833 - 44637768
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacac 226  Q
    ||||||||||||||||||| |   | |||||||||||||| |||||||  ||||||||||||||||    
T  44637833 gagttcatctttgctccatctaagtatgctccatttactccttttcaagacatagatgtgtgacac 44637768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 50745652 - 50745725
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | |||||| |||||| ||||| |||||||| || || ||||| | |||||||||||||    
T  50745652 ttgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaaattatagcaaaaaaattgttcaaatatc 50745725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 16295567 - 16295647
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||||||||||||||| ||||||  ||||| | ||| || ||||||||||| ||||| ||||||  ||||||| ||||||    
T  16295567 ttgtttttgaccaataaaaagagagaacaacaaagttgtctcaaaagttgtaccaaaatagttgtcaaaatatcactactc 16295647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 48490481 - 48490401
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||| ||||||||| |||||| || | ||| || || || |||||||||||| |||||||||||||||||| | ||||||    
T  48490481 ttgttattgaccaatgagaagaaaaaataacaagattgtcacaaaagttgtattaaaagagttgttcaaataacactactc 48490401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 51385408 - 51385336
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatat 73  Q
    ||||||||||||||| | ||||||  |||||  |||| ||||||||||||||  |||| ||||||||||||||    
T  51385408 ttgtttttgaccaatgaaaagagagaacaacatggttgtcccaaaagttgtactaaaatagttgttcaaatat 51385336  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 2935479 - 2935397
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    ||||| ||||||||| |||||| |  | ||| ||||| || |||||||||||  |||||||||||||||||| | ||||||||    
T  2935479 ttgttattgaccaatgagaagaaagaataacaaggttgtcacaaaagttgtactaaaagagttgttcaaataacactactctt 2935397  T

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Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 27276837 - 27276919
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    |||||||| | |||||| || |||| ||||| ||||| || ||||| ||||| ||||| |||||||||||||||  |||||||    
T  27276837 ttgtttttaatcaataaaaaaagaaaacaacaaggttgtctcaaaaattgtaccaaaatagttgttcaaatatcattactctt 27276919  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 43220106 - 43220025
Alignment:
Q  5 ttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttttt 86  Q
    ||||||||||| |||| |||  ||||| |  || ||||||||||| ||  |||| ||||||||||||||| |||||||||||    
T  43220106 ttttgaccaatgagaatagagaacaacaaaattgtcccaaaagttatactaaaaaagttgttcaaatatcactactcttttt 43220025  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 44827056 - 44827129
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||| | ||| | |||| | |||||| ||||| ||| |||||||||| ||||| |||||||||||||||    
T  44827056 ttgtttttggctaatgaaaagacagcacaacaaggttgtcctaaaagttgtagcaaaaaagttgttcaaatatc 44827129  T

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Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 49361805 - 49361716
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctttttaaaa 90  Q
    ||||| ||||||||| |||||| |  | ||| | ||| || |||||||||||  |||||||||||||||||| | |||||| ||||||||    
T  49361805 ttgttattgaccaatgagaagaaagaataacaaagttgtcacaaaagttgtactaaaagagttgttcaaataacactactccttttaaaa 49361716  T

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Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 52103565 - 52103508
Alignment:
Q  160 cgagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagat 217  Q
    ||||||||||||||||||||||    || |||||||||||| ||| ||||||||||||    
T  52103565 cgagttcatctttgctccatttaacattcctccatttactcctttccaatgcatagat 52103508  T

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Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 48205148 - 48205228
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    ||||| |||| |||| |||||| || | ||| ||||| || |||||||||||  |||||||||||||||||| | ||||||    
T  48205148 ttgttattgatcaatgagaagaaaaaataacaaggttgtcacaaaagttgtactaaaagagttgttcaaataacactactc 48205228  T

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Target: scaffold0024 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 48757 - 48840
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttt 84  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| |||||||||||||  ||||||||    
T  48757 ttgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtatcaaaagaattgttcaaatatcattactcttt 48840  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 17442925 - 17443010
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttttt 86  Q
    |||||||||| |||||||||||||||||||  ||||| |||||||||||||| ||||||||||||||||| ||| |||||||||||    
T  17442925 ttgtttttgatcaataagaagagaacacaataaggttgtcccaaaagttgtaccaaaagagttgttcaaaaatcactactcttttt 17443010  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 34792109 - 34792190
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactct 82  Q
    ||||||||||||||||| || |||||||||| ||||| ||||||||||| || ||||||||||||||||||||| |||||||    
T  34792109 ttgtttttgaccaataaaaaaagaacacaacaaggttgtcccaaaagttataccaaaagagttgttcaaatatcactactct 34792190  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7304073 - 7304000
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| ||||||||  |||| |||||| || |||||||||||||||||||||||||||||||||    
T  7304073 ttgtttttgaccaatgagaagagagaacaatgaggttgtctcaaaagttgtatcaaaagagttgttcaaatatc 7304000  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 608629 - 608556
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| ||||||||  ||||| ||||| |||||| ||||||| ||||| |||||||||||||||    
T  608629 ttgtttttgaccaatgagaagagagaacaacaaggttgtcccaacagttgtaccaaaatagttgttcaaatatc 608556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9395305 - 9395232
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | |||||| |||||| || || |||||||||||||| ||||| |||||||||||||||    
T  9395305 ttgtttttgaccaatgataagagagcacaacaagattgtcccaaaagttgtagcaaaaaagttgttcaaatatc 9395232  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 6997516 - 6997445
Alignment:
Q  3 gtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||| | |||||| |||||| ||||| |||||||||||||| ||||| | |||||||||||||    
T  6997516 gtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaaattgttcaaatatc 6997445  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 19713097 - 19713182
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactcttttt 86  Q
    |||||||| |||||| | |||||| |||||| ||||| |||||||||||||   |||| |||||||||||||||  ||||||||||    
T  19713097 ttgttttttaccaatgaaaagagagcacaacaaggttgtcccaaaagttgttgtaaaaaagttgttcaaatatcattactcttttt 19713182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 32135405 - 32135332
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | |||||| |||||| || || ||| |||||||||| ||||| |||||||||||||||    
T  32135405 ttgtttttgaccaatgaaaagagagcacaacaagattgtcctaaaagttgtagcaaaaaagttgttcaaatatc 32135332  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27790203 - 27790157
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaag 47  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  27790203 ttgtttttgaccaataaaaagagaacacaacaaggttgtcccaaaag 27790157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10557512 - 10557585
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | ||||||  ||||| || || | |||||||||||| ||||| |||||||||||||||    
T  10557512 ttgtttttgaccaatgaaaagagagtacaacaagattgttccaaaagttgtagcaaaaaagttgttcaaatatc 10557585  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 16121258 - 16121328
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    |||||||||||||| |||| | |||||| |  || ||||||||||| || ||||| |||||||||||||||    
T  16121258 tttttgaccaataaaaagatagcacaacaaaattgtcccaaaagttatagcaaaaaagttgttcaaatatc 16121328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 22422253 - 22422335
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctt 83  Q
    ||||||||||| ||| ||||||||  ||||| | ||| | |||||||||||| ||||| | |||||||||||||  |||||||    
T  22422253 ttgtttttgactaatgagaagagagaacaacaaagttgtaccaaaagttgtaccaaaataattgttcaaatatcattactctt 22422335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2165268 - 2165195
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | |||||| |||| | ||||| || ||||||||||| ||||| | ||||| |||||||    
T  2165268 ttgtttttgaccaatgaaaagagagcacatcaaggttgtcacaaaagttgtagcaaaaaaattgtttaaatatc 2165195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2176901 - 2176828
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | |||||| |||| | ||||| || ||||||||||| ||||| | ||||| |||||||    
T  2176901 ttgtttttgaccaatgaaaagagagcacatcaaggttgtcacaaaagttgtagcaaaaaaattgtttaaatatc 2176828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 2241760 - 2241708
Alignment:
Q  35 gttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactctttttaa 88  Q
    |||||| |||||||||||||||| | |||||||||||||| ||| |||||||||    
T  2241760 gttatcacaaaagttgtatcaaatg-gttgttcaaatatcactattctttttaa 2241708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 52264 - 52348
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagatgtgtgacacgtggaacaaacaaatccaa 245  Q
    ||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| |||  | ||||||||||||    
T  52264 gagttcatctttgctccatttttgtttcctccatttactccttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaa 52348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 1812 - 1735
Alignment:
Q  4 tttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatcgctactc 81  Q
    |||||||||||||||||||||||| ||| || || |||||||||||||| ||||||||||||||||||||| ||||||    
T  1812 tttttgaccaataagaagagaacataacaagattgtcccaaaagttgtaccaaaagagttgttcaaatatcactactc 1735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 3046 - 3119
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | |||||| |||||  | ||| |||||||||||||| ||||| |||||||||||||||    
T  3046 ttgtttttgaccaatgaaaagagagcacaataaagttgtcccaaaagttgtagcaaaaaagttgttcaaatatc 3119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 17141 - 17214
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgttcaaatatc 74  Q
    ||||||||||||||| | |||||| |||| | ||||| || ||||||||||| ||||| | ||||| |||||||    
T  17141 ttgtttttgaccaatgaaaagagagcacatcaaggttgtcacaaaagttgtagcaaaaaaattgtttaaatatc 17214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 1013 - 1077
Alignment:
Q  1 ttgtttttgaccaataagaagagaacacaacgaggttatcccaaaagttgtatcaaaagagttgt 65  Q
    ||||||||||||||| | ||||||  ||||| | |||||| ||||||||||| ||||| ||||||    
T  1013 ttgtttttgaccaatgaaaagagagaacaacaaagttatctcaaaagttgtaccaaaatagttgt 1077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 155425 - 155481
Alignment:
Q  161 gagttcatctttgctccatttttatttgctccatttactcattttcaatgcatagat 217  Q
    |||||||||||||||||||||    || |||||||||||| |||| |||||||||||    
T  155425 gagttcatctttgctccatttagccttactccatttactccttttgaatgcatagat 155481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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