View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19103_low_175 (Length: 227)
Name: NF19103_low_175
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_175 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 5920125 - 5919899
Alignment:
| Q |
1 |
tttctaaacaaaagcatttacctttttcttcaagtttatctcatgcctcttccaattttgaattgcttcattttgacatatggggtcctctttcaatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
5920125 |
tttctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgcttcattttgacatatggggtcctatttcaacttc |
5920026 |
T |
|
| Q |
101 |
atatgtccatggccatagatattttctcactatacttgatgaccatagcagatttttatggattattcctctaaagtctaaatcagaagtttcccttcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
5920025 |
atatgtccatggccatagatattttctcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttccgttcat |
5919926 |
T |
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| Q |
201 |
gtgaaaaatttcattctcatgatcaga |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5919925 |
gtgaaaaatttcattctcatgatcaga |
5919899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 20324437 - 20324211
Alignment:
| Q |
1 |
tttctaaacaaaagcatttacctttttcttcaagtttatctcatgcctcttccaattttgaattgcttcattttgacatatggggtcctctttcaatttc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||| |||||||||||||||||||||||| |||| ||||| |
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| T |
20324437 |
tttctaaacaaaaacatttacctttttcttcaagtttatctcatgcttctactaattttgaattacttcattttgacatatggggtcctatttccatttc |
20324338 |
T |
|
| Q |
101 |
atatgtccatggccatagatattttctcactatacttgatgaccatagcagatttttatggattattcctctaaagtctaaatcagaagtttcccttcat |
200 |
Q |
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|| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||| |
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| T |
20324337 |
atctgtccatggtcatagatattttctcactatacttgatgatcatagcagatttttatggattattcttctaaaatctaaatcagaagtttctcttcat |
20324238 |
T |
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| Q |
201 |
gtgaaaaatttcattctcatgatcaga |
227 |
Q |
| |
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|||||||| |||||||||||||||||| |
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| T |
20324237 |
gtgaaaaacttcattctcatgatcaga |
20324211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 167
Target Start/End: Complemental strand, 34891252 - 34891091
Alignment:
| Q |
6 |
aaacaaaagcatttacctttttcttcaagtttatctcatgcctcttccaattttgaattgcttcattttgacatatggggtcctctttcaatttcatatg |
105 |
Q |
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|||||||| ||| | |||||| |||| |||||||||||||| || ||||||||||||||| | ||| |||| ||||| || ||| | || |||||| || |
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| T |
34891252 |
aaacaaaaacatatcccttttacttccagtttatctcatgcatcatccaattttgaattgttgcatcttgatatatgaggccctttgtctgtttcatctg |
34891153 |
T |
|
| Q |
106 |
tccatggccatagatattttctcactatacttgatgaccatagcagatttttatggattatt |
167 |
Q |
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| |||||||| | |||||| | || || ||||||| ||||| |||||| ||||||||||| |
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| T |
34891152 |
ttcatggccacaagtattttttaaccattgttgatgatcatagtagatttctatggattatt |
34891091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 19587091 - 19586940
Alignment:
| Q |
4 |
ctaaacaaaagcatttacctttttcttcaagtttatctcatgcctcttccaattttgaattgcttcattttgacatatggggtcctctttcaatttcata |
103 |
Q |
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||||||| || ||||||||||| ||||||| | |||||||| ||| ||||||||||||| |||||| |||| || |||||||| | || ||| ||| |
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| T |
19587091 |
ctaaacataaacatttacctttcaattcaagtatttctcatgcttctaccaattttgaattacttcatcttgatatttggggtccattatctattgcatc |
19586992 |
T |
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| Q |
104 |
tgtccatggccatagatattttctcactatacttgatgaccatagcagattt |
155 |
Q |
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||| ||||| || ||||| ||||| ||||| | ||||| |||||||||||| |
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| T |
19586991 |
tgtacatggtcacagatactttcttactattgtagatgatcatagcagattt |
19586940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 155
Target Start/End: Original strand, 12285200 - 12285351
Alignment:
| Q |
4 |
ctaaacaaaagcatttacctttttcttcaagtttatctcatgcctcttccaattttgaattgcttcattttgacatatggggtcctctttcaatttcata |
103 |
Q |
| |
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||||||| || ||||||||||| ||||||| | |||||||| ||| |||||| |||||| |||||| |||| || |||||||| | || ||| ||| |
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| T |
12285200 |
ctaaacataaacatttacctttcaattcaagtatttctcatgcttctaccaattatgaattacttcatcttgatatttggggtccattatctattgcatc |
12285299 |
T |
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| Q |
104 |
tgtccatggccatagatattttctcactatacttgatgaccatagcagattt |
155 |
Q |
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||| ||||| || ||||| ||||| ||||| | ||||| |||||||||||| |
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| T |
12285300 |
tgtacatggtcacagatactttcttactattgtagatgatcatagcagattt |
12285351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 4646323 - 4646295
Alignment:
| Q |
114 |
catagatattttctcactatacttgatga |
142 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
4646323 |
catagatattttctcactatacttgatga |
4646295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 155
Target Start/End: Original strand, 52777580 - 52777731
Alignment:
| Q |
4 |
ctaaacaaaagcatttacctttttcttcaagtttatctcatgcctcttccaattttgaattgcttcattttgacatatggggtcctctttcaatttcata |
103 |
Q |
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||||||| || ||||||||||| ||||||| | |||||||| ||| ||||||||||||| |||||| |||| || |||||||| | || ||| ||| |
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| T |
52777580 |
ctaaacataaacatttacctttcaattcaagtatttctcatgcttctaccaattttgaattacttcatcttgatatttggggtccattatctattgcatc |
52777679 |
T |
|
| Q |
104 |
tgtccatggccatagatattttctcactatacttgatgaccatagcagattt |
155 |
Q |
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|
||| ||||| || ||||| ||||| ||||| | ||||| |||||||||||| |
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| T |
52777680 |
tgtacatggtcacagatactttcttactattgtagatgatcatagcagattt |
52777731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 32612731 - 32612625
Alignment:
| Q |
119 |
atattttctcactatacttgatgaccatagcagatttttatggattattcctctaaagtctaaatcagaagtttcccttcatgtgaaaaatttcattctc |
218 |
Q |
| |
|
|||||||||||| ||| | ||||| |||||||||||| ||||| | |||| | |||| || || ||||||||||| |||||||||||| ||| || ||| |
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| T |
32612731 |
atattttctcaccatattggatgatcatagcagatttctatgggtcattcttttaaaatcaaagtcagaagtttctattcatgtgaaaatttttatcctc |
32612632 |
T |
|
| Q |
219 |
atgatca |
225 |
Q |
| |
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||||||| |
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| T |
32612631 |
atgatca |
32612625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 155
Target Start/End: Original strand, 10909 - 11060
Alignment:
| Q |
4 |
ctaaacaaaagcatttacctttttcttcaagtttatctcatgcctcttccaattttgaattgcttcattttgacatatggggtcctctttcaatttcata |
103 |
Q |
| |
|
||||||| || ||||||||||| ||| ||| | |||||||| ||| ||||||||||||| |||||| |||| || |||||||| | || ||| ||| |
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| T |
10909 |
ctaaacataaacatttacctttcaattccagtatttctcatgcttctaccaattttgaattacttcatcttgatatttggggtccattatctattgcatc |
11008 |
T |
|
| Q |
104 |
tgtccatggccatagatattttctcactatacttgatgaccatagcagattt |
155 |
Q |
| |
|
||| ||||| || ||||| ||||| ||||| | ||||| |||||||||||| |
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| T |
11009 |
tgtacatggtcacagatactttcttactattgtagatgatcatagcagattt |
11060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 22177322 - 22177171
Alignment:
| Q |
4 |
ctaaacaaaagcatttacctttttcttcaagtttatctcatgcctcttccaattttgaattgcttcattttgacatatggggtcctctttcaatttcata |
103 |
Q |
| |
|
||||||| || ||||||||||| ||| ||| | |||||||| ||| ||||||||||||| |||||| |||| || |||||||| | || ||| ||| |
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| T |
22177322 |
ctaaacataaacatttacctttcaattccagtatttctcatgcttctaccaattttgaattacttcatcttgatatttggggtccattatctattgcatc |
22177223 |
T |
|
| Q |
104 |
tgtccatggccatagatattttctcactatacttgatgaccatagcagattt |
155 |
Q |
| |
|
||| ||||| || ||||| ||||| ||||| | ||||| |||||||||||| |
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|
| T |
22177222 |
tgtacatggtcacagatactttcttactattgtagatgatcatagcagattt |
22177171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 193
Target Start/End: Complemental strand, 18834281 - 18834149
Alignment:
| Q |
61 |
aattgcttcattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgatgaccatagcagatttttatg |
160 |
Q |
| |
|
|||||||||||||||||||| |||| || ||| | ||| | || ||| | |||| ||||||||| ||||| |||||||||||| |||||||||||| |
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| T |
18834281 |
aattgcttcattttgacatacggggaccccttgccattaattcagtacatagacataaatattttcttactattgttgatgaccataccagatttttatg |
18834182 |
T |
|
| Q |
161 |
gattattcctctaaagtctaaatcagaagtttc |
193 |
Q |
| |
|
||| |||| | | || ||||| || |||||||| |
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|
| T |
18834181 |
gatcattcttttgaaatctaagtctgaagtttc |
18834149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 167
Target Start/End: Original strand, 35087208 - 35087267
Alignment:
| Q |
108 |
catggccatagatattttctcactatacttgatgaccatagcagatttttatggattatt |
167 |
Q |
| |
|
||||| ||||| |||||| | |||||||||||||||||||||||||| | ||||||||| |
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|
| T |
35087208 |
catggtcataggtattttttgactatacttgatgaccatagcagattcctttggattatt |
35087267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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