View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_177 (Length: 223)
Name: NF19103_low_177
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_177 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 12829094 - 12828899
Alignment:
| Q |
12 |
aagaatataaccacaaaagcaaaggaaaacactcagtcattaagcttatatcgtagtgaatgtacttgaaattacgttcgcagatattagaaatattgat |
111 |
Q |
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| T |
12829094 |
aagaatataaccacaaaagcaaaggaaaacactcagtcattaagcttatatcgtagtgaatgtacttgaaattacgttcgcagatattagaaatattgat |
12828995 |
T |
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| Q |
112 |
tgttgtatattggagtggaacaaaaaccctcagatctcatagctgagtataaatcatctgcaacttatgacaatggcgttattcacagccttcgtg |
207 |
Q |
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| T |
12828994 |
tgttgtatattggagtggaacaaaaaccctcagatctcatagctgagtataaatcatctgcaacttatgacaatggcgttattcacagccttcgtg |
12828899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 12820083 - 12819998
Alignment:
| Q |
118 |
atattggagtggaacaaaaaccctcagatctcatagctgagtataaatcatctgcaacttatgacaatggcgttattcacagcctt |
203 |
Q |
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| T |
12820083 |
atattggattgcaacaaaaaccctcagatctcatagctaagaataaatcatctgcagcttatgacaatggcttcattcacagcctt |
12819998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 12813850 - 12813763
Alignment:
| Q |
118 |
atattggagtggaacaaaaaccctcagatctcatagctgagtataaatcatctgcaacttatgacaatggcgttattcacagccttcg |
205 |
Q |
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| T |
12813850 |
atattggattgcaacaaaaaccctcagatctcatagctaagaataaatcatatgcagcttatgacaatggcttcattcacagccttcg |
12813763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 12824015 - 12823938
Alignment:
| Q |
130 |
aacaaaaaccctcagatctcatagctgagtataaatcatctgcaacttatgacaatggcgttattcacagccttcgtg |
207 |
Q |
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| T |
12824015 |
aacaaaagccctcagatctcatagctaagtattaatcatctgcagcttatgacaatggcatcattcacagccttcgtg |
12823938 |
T |
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