View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_180 (Length: 218)
Name: NF19103_low_180
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_180 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 14481514 - 14481688
Alignment:
| Q |
25 |
ttgtaaatggaggaaagtttggaagcaaattgtggggaaaagcccaaattgtggacgaggtatgacactgcaaaagaggttgaatctgaagtattggtgc |
124 |
Q |
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| T |
14481514 |
ttgtaagtggaacaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtatgagactgcaaaagaggttgaatctgaagtattggtgc |
14481613 |
T |
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| Q |
125 |
aaaaaggaagagaaaatgtcggtgattggtagtgatgaaaaagagggtaaggttttggggttggtaagaaagtta |
199 |
Q |
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| T |
14481614 |
aaaaaggaagagaaaatgttggtaattggtatcgatggaaaagagggtaaggttttggggttggtaagaaagtta |
14481688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 14485106 - 14484995
Alignment:
| Q |
18 |
atgaatattgtaaatggaggaaagtttggaagcaaattgtggggaaaagcccaaattgtggacgaggtatgacactgcaaaagaggttgaatctgaagta |
117 |
Q |
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| T |
14485106 |
atgaacattgtaagtggaggaaagtttggaagcaaattgtggggaaaagccaaaattgttgatgaggtaagagacggcaaaaaaggttgaatctgaagtg |
14485007 |
T |
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| Q |
118 |
ttggtgcaaaaa |
129 |
Q |
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|||||| ||||| |
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| T |
14485006 |
ttggtggaaaaa |
14484995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 14476331 - 14476436
Alignment:
| Q |
24 |
attgtaaatggaggaaagtttggaagcaaattgtggggaaaagcccaaattgtggacgaggtatgacactgcaaaagaggttgaatctgaagtattggtg |
123 |
Q |
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| T |
14476331 |
attgtaagtggaggaaagtttggaagcagattgtgggtcaaagccaaaattgttgatgaggtaggagacagcaaaagaggttgaatctgaagtgttggtg |
14476430 |
T |
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| Q |
124 |
caaaaa |
129 |
Q |
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|||||| |
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| T |
14476431 |
caaaaa |
14476436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 14502025 - 14501923
Alignment:
| Q |
40 |
agtttggaagcaaattgtggggaaaagcccaaattgtggacgaggtatgacactgcaaaagaggttgaatctgaagtattggtgcaaaaaggaagagaaa |
139 |
Q |
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||||||||||||||||||||| |||||| ||||||| || ||||||||| || | ||| ||||||||||||||||| |||||||| ||| ||||||||| |
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| T |
14502025 |
agtttggaagcaaattgtgggtcaaagccaaaattgttgatgaggtatgagacagaaaatgaggttgaatctgaagtgttggtgcagaaatgaagagaaa |
14501926 |
T |
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| Q |
140 |
atg |
142 |
Q |
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||| |
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| T |
14501925 |
atg |
14501923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 14165509 - 14165612
Alignment:
| Q |
40 |
agtttggaagcaaattgtggggaaaagcccaaattgtggacgaggtatgacactgcaaaagaggttgaatctgaagtattggtgcaaaaaggaagagaaa |
139 |
Q |
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|||||||||||||||||||||| ||| || |||||||| | |||||| || ||||||| |||||||||| |||||| |||||||| ||| | ||||||| |
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| T |
14165509 |
agtttggaagcaaattgtggggtaaacccaaaattgtgaatgaggtaagaggctgcaaatgaggttgaatttgaagtgttggtgcagaaatgtagagaaa |
14165608 |
T |
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| Q |
140 |
atgt |
143 |
Q |
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|||| |
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| T |
14165609 |
atgt |
14165612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 14144756 - 14144671
Alignment:
| Q |
40 |
agtttggaagcaaattgtggggaaaagcccaaattgtggacgaggtatgacactgcaaaagaggttgaatctgaagtattggtgca |
125 |
Q |
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| T |
14144756 |
agtttggaagcaaattgtgggtcaaacccaaaattgtgaatgaggtaggaggctgcaaaagaggttgaatctgaagggttggtgca |
14144671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 14152738 - 14152653
Alignment:
| Q |
40 |
agtttggaagcaaattgtggggaaaagcccaaattgtggacgaggtatgacactgcaaaagaggttgaatctgaagtattggtgca |
125 |
Q |
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|||||||||||| |||||||| ||| || ||||||| || |||||| || ||||||| |||||||||||||||||| |||||||| |
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| T |
14152738 |
agtttggaagcagattgtgggtcaaaaccaaaattgttgatgaggtaggagactgcaagagaggttgaatctgaagtgttggtgca |
14152653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 14494553 - 14494436
Alignment:
| Q |
25 |
ttgtaaatggaggaaagtttggaagcaaattgtggggaaaagcccaaattgtggacgaggtatgacactgcaaaagaggttgaatctgaagtattggtgc |
124 |
Q |
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|||||| ||||| | |||||||||||| |||||||| ||| || || ||||| | ||||||||| || ||||||||||||||||| |||| ||||||| |
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| T |
14494553 |
ttgtaagtggagcagagtttggaagcagattgtgggtcaaacccaaacttgtgaatgaggtatgagacagcaaaagaggttgaatcagaagcgttggtgc |
14494454 |
T |
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| Q |
125 |
aaaaaggaagagaaaatg |
142 |
Q |
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| ||| | |||||||||| |
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| T |
14494453 |
ataaatggagagaaaatg |
14494436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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