View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19103_low_184 (Length: 210)
Name: NF19103_low_184
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_184 |
 | |
|
| [»] chr4 (9 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 23408393 - 23408602
Alignment:
| Q |
1 |
tcaaaacagagagaaacccaattctacaagcaattttcaagtcaaatatcattaactccatttcttacacaaaagacatcaacagatcccattagttcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408393 |
tcaaaacagagagaaacccaattctacaagcaattttcatgtcaaatatcattaactccatttcttacacaaaagacatcaacagatcccattagttcat |
23408492 |
T |
|
| Q |
101 |
tacaactcagaaaattaaaacactaagaaaccaataaacataaacgaaatgtctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23408493 |
tacaactcagaaaattaaaacactaagaaaccaataaacataatcgaaatgtctaagagctagtaaacttagtcacagccttggtgccttcagaaacagc |
23408592 |
T |
|
| Q |
201 |
atgcttggcc |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
23408593 |
atgcttggcc |
23408602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 23415712 - 23415771
Alignment:
| Q |
151 |
gtctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggcc |
210 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
23415712 |
gtctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggcc |
23415771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 23453376 - 23453434
Alignment:
| Q |
152 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggcc |
210 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23453376 |
tctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggcc |
23453434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 26434298 - 26434240
Alignment:
| Q |
152 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggcc |
210 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
26434298 |
tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggcc |
26434240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 26833009 - 26832951
Alignment:
| Q |
152 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggcc |
210 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
26833009 |
tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggcc |
26832951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 26436078 - 26436020
Alignment:
| Q |
152 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggcc |
210 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || ||||||||| ||||||||||| |
|
|
| T |
26436078 |
tctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggcc |
26436020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 23869006 - 23868948
Alignment:
| Q |
152 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggcc |
210 |
Q |
| |
|
||||||| || || |||||||||||||| || || ||||||||||||||||| |||||| |
|
|
| T |
23869006 |
tctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggcc |
23868948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 23886101 - 23886043
Alignment:
| Q |
152 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggcc |
210 |
Q |
| |
|
||||||| || |||||||| |||||||| ||||| || ||||| ||||||||||||||| |
|
|
| T |
23886101 |
tctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggcc |
23886043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 24307497 - 24307439
Alignment:
| Q |
152 |
tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggcc |
210 |
Q |
| |
|
||||||| || || ||||| |||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
24307497 |
tctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggcc |
24307439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 33216708 - 33216661
Alignment:
| Q |
163 |
gtaaacttagtcacagccttggtgccttcagaaacagcatgcttggcc |
210 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||| |||||| |
|
|
| T |
33216708 |
gtaaacttggtcacagccttggtaccctcagaaacagcatgtttggcc |
33216661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University