View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_188 (Length: 202)
Name: NF19103_low_188
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_188 |
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| [»] scaffold0201 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 40508790 - 40508950
Alignment:
| Q |
20 |
attacaattacaacttccaggttcattcattcttcaccttcttcatttcacaatcaccataaacaaatttccagaaacaacatcacatgatttccagaaa |
119 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40508790 |
attacaattacaactttcaggttcattcattcttcaccttcttcatttcacaatcaccataaacaaatttctagaaacaacatcacatgatttccagaaa |
40508889 |
T |
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| Q |
120 |
caaatttccagaagtgcaacatcaaaaatcaaaacacgaattctttatccatgaatttcca |
180 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40508890 |
caaatttccagaagtgcaacatcaaaaatcaaaacacgaattctttatccatgaatttcca |
40508950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 4299091 - 4299246
Alignment:
| Q |
20 |
attacaattacaacttccaggttcattcattcttcaccttcttcatttcacaatcaccataaacaaatttccagaaacaacatcacatgatttccagaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4299091 |
attacaattacaacttccaggttcattcattcttcaccttcttcatttcacaatcaccataaacaaatttccagaaacaacatcacatgatttccataaa |
4299190 |
T |
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| Q |
120 |
caaatttccagaagtgcaacatcaaaaatcaaaacacgaatt-ctttatccatgaa |
174 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4299191 |
caaatttccaaaagtgcaacatcaaaaatcaaaacacgaattcctttatccatgaa |
4299246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 9e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 49343697 - 49343542
Alignment:
| Q |
20 |
attacaattacaacttccaggttcattcattcttcaccttcttcatttcacaatcaccataaacaaatttccagaaacaacatcacatgatttccagaaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49343697 |
attacaattacaacttccaggttcattcattcttcaccttcttcatttcacaatcaccataaacaaatttccagaaacaacatcacatgatttccataaa |
49343598 |
T |
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| Q |
120 |
caaatttccagaagtgcaacatcaaaaatcaaaacacgaatt-ctttatccatgaa |
174 |
Q |
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|||||||||| || |||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
49343597 |
caaatttccaaaaatgcaacatcaaaaatcaaaacatgaattcctttatccatgaa |
49343542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 42810027 - 42809923
Alignment:
| Q |
49 |
ttcttcaccttcttcatttcacaatcaccataaacaaatttccagaaacaacatcacatgatttccagaaacaaatttccagaagtgcaacatcaaaaat |
148 |
Q |
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|||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
42810027 |
ttcttcaccttctt---ttcaccatcatcttaaacaaatttccagaaacaacatcacatgattttcagaaacaaatttccagaactgcaacatcaaaaat |
42809931 |
T |
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| Q |
149 |
caaaacac |
156 |
Q |
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|||||||| |
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| T |
42809930 |
caaaacac |
42809923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 9e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 41872868 - 41872971
Alignment:
| Q |
49 |
ttcttcaccttcttcatttcacaatcaccataaacaaatttccagaaacaacatcacatgatttccagaaacaaatttccagaagtgcaacatcaaaaat |
148 |
Q |
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|||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |
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| T |
41872868 |
ttcttcaccttctt---ttcaccatcaccttaaacaaatttccagaaacaacatcacatgattt-cagaaacaaatttccaaaagtggaacatcaaaaat |
41872963 |
T |
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| Q |
149 |
caaaacac |
156 |
Q |
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|||||||| |
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| T |
41872964 |
caaaacac |
41872971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 14477483 - 14477419
Alignment:
| Q |
117 |
aaacaaatttccagaagtgcaacatcaaaaatcaaaacacgaatt-ctttatccatgaatttcca |
180 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14477483 |
aaacaaatttacagaagtgcaacatcaaaaatcaaaacacgaattcctttatccatgaatttcca |
14477419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 22336 - 22286
Alignment:
| Q |
79 |
taaacaaatttccagaaacaacatcacatgatttccagaaacaaatttcca |
129 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22336 |
taaacaaatttccagaaacaacatcacatgattttcagaaacaaatttcca |
22286 |
T |
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