View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_189 (Length: 202)
Name: NF19103_low_189
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_189 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 8e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 21636669 - 21636859
Alignment:
| Q |
12 |
atgaatgaaatctaagtaaaagtaactcatagtttttagaatgaaacataagcaaattttaaaaaattatcgataatttaatatatggcagtgtctctaa |
111 |
Q |
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| T |
21636669 |
atgaatgaaatctaagtaaaagtaactcatagtttttagaatgaaacataagcaaattttaaaaaattatcggtaatttaatatatggtagtgtctctaa |
21636768 |
T |
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| Q |
112 |
aatatacctcgtttaattaactttttatatttgcaatgactaaatttattagtcattagagggtaatataggcaaaagacttaacttttat |
202 |
Q |
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| T |
21636769 |
aatatacctcatttaattaactttttatatttgcaatgactaaatttattagtcattagagggtaatataggcaaaagacttaacttttat |
21636859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 27760504 - 27760694
Alignment:
| Q |
12 |
atgaatgaaatctaagtaaaagtaactcatagtttttagaatgaaacataagcaaattttaaaaaattatcgataatttaatatatggcagtgtctctaa |
111 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
27760504 |
atgaatgaaatctaagtaaaagtaactgatagtttttagaatgaaacataagcaaattttaaaaaattatcggtaatttaatatatggtagtgtctctaa |
27760603 |
T |
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| Q |
112 |
aatatacctcgtttaattaactttttatatttgcaatgactaaatttattagtcattagagggtaatataggcaaaagacttaacttttat |
202 |
Q |
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| T |
27760604 |
aatatacctcatttaattaactttttatatttgcaatgactaaatttattagtcattagagggtaatataggcaaaagactttacttttat |
27760694 |
T |
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