View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_19 (Length: 464)
Name: NF19103_low_19
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 45101656 - 45101334
Alignment:
| Q |
20 |
cacgaaagttcatctcttgttttcgaacaactcaacaataaaacacgattagaatttaggaagcatgatcagatagaatatgtgtgtggatgtagtgcca |
119 |
Q |
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| T |
45101656 |
cacgaaagttcatctcttgttttcgaacaactcaacaataaa-cacgattagaatttaggaagcatgatcagatagaatatttgtatggatgtagtgcca |
45101558 |
T |
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| Q |
120 |
aaaaagagttatataacatggaggagta---------------------ataataatgcaaggcaacaatcatactttacacacgttagtttcgacaagt |
198 |
Q |
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| T |
45101557 |
aaaaagagttatataacatggaggagtatcttatgacatggagcgtcaaataataatgcaagacaacaatcatattttacacacgttagtttcgaaaagt |
45101458 |
T |
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| Q |
199 |
aacaacaatcggatcattatctttgttaaccacattcatggctaataggattttaggttccgtacttttgtctataaatatcacttataaatttcatttt |
298 |
Q |
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| T |
45101457 |
aacaacaatcggatcattatctttgttaaccacattcatgactaataggattttaggttccgtacttttgtctataaatatcacttataaatttcatttt |
45101358 |
T |
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| Q |
299 |
acacacacttaatcgatcaaataa |
322 |
Q |
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| T |
45101357 |
atacacacttaatcgatcaaataa |
45101334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 394 - 449
Target Start/End: Complemental strand, 45101227 - 45101172
Alignment:
| Q |
394 |
gagttgagaaacccacatatgaagtataaagtttctaatttagcatagtcgtttga |
449 |
Q |
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| T |
45101227 |
gagttgagaaacccacatatgaagtataaagtttctaatttagcgtactcgtttga |
45101172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 33500692 - 33500732
Alignment:
| Q |
266 |
ttgtctataaatatcacttataaatttcattttacacacac |
306 |
Q |
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| T |
33500692 |
ttgtctataaatatcacatgtaaatttcattttagacacac |
33500732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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