View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_22 (Length: 460)
Name: NF19103_low_22
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 184 - 380
Target Start/End: Original strand, 24551939 - 24552135
Alignment:
| Q |
184 |
gggaaatatagtattgttggaaagttaagaagagtacgcacgcaatgctagttttaaggaaaagttgttgctaattctacttcatattgtattgtgttgt |
283 |
Q |
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| T |
24551939 |
gggaaatatagtagtgttggaaagttaagaagattacgcacgcaatgctagttttaaggaaaagttgttgctaattctacttcatattgtattgtgttgt |
24552038 |
T |
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| Q |
284 |
caaatacacttattatcattatctcaacactcaacaaaacaaaagttggatcctcccttgagaaactatggagaagaaaatgataacttccaaacta |
380 |
Q |
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| T |
24552039 |
caaatacacttattatcattatctcaacactcaacagaacaaaacttggatcctcccttgagaaactatggagaagaaaatgataacttccaaacta |
24552135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 24551791 - 24551844
Alignment:
| Q |
7 |
tagattatactattttgtcctcctattaggcaagccttgtgcttgatgtgggtg |
60 |
Q |
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| T |
24551791 |
tagataatactattttgtcctcctattaggcagaccttgcgcttgatgtgggtg |
24551844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 24561999 - 24562056
Alignment:
| Q |
319 |
aaaacaaaagttggatcctcccttgagaaactatggagaagaaaatgataacttccaaact |
379 |
Q |
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| T |
24561999 |
aaaacaaaacttggatccttccttgagaaaccatgg---agaaaataataacttccaaact |
24562056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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