View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_23 (Length: 457)
Name: NF19103_low_23
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 17822731 - 17822303
Alignment:
| Q |
11 |
cagagaatccagttaggcattacatagacaaag---gtatagtgtgaacttatcaattgaatttcgatctaatacaaaagaggacggtatgaaccnnnnn |
107 |
Q |
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| T |
17822731 |
cagagaatccagttaggcattacatagacaaagaaggtagagtgtgaacttatcaattgaatttagatctaatacaaaagaggacggtatgaaccttttt |
17822632 |
T |
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| Q |
108 |
nnnaacagggggagagtataaccttagaaacatcatgctattcaaacataataagatcataatattcaaatattgcaagacacgttaaggacgagacatt |
207 |
Q |
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| T |
17822631 |
tttaacagggggagagtataaccttagaaacatcatgctattcaaacataataagatcataatattcaaatattgcaagacacgttaaggacgagacatt |
17822532 |
T |
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| Q |
208 |
catgggcgaacaattagcaaggtgcagtgtactatcttattggataataaaatacaagtttagctttgacatgagtcattcattacaagaccataaaaga |
307 |
Q |
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| T |
17822531 |
catgggcgaacaatgagcaaggtgcagtgtactatcttattggataataaaatacaattttagctttgacatgagtcattcattacaagaccataaaaga |
17822432 |
T |
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| Q |
308 |
ctacagaatcctctcagaaaatatgccatttcaaaccttcttccctcaaaagcgcaaattttctattttatttgctacaacatccactcatgtcagaaat |
407 |
Q |
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| T |
17822431 |
ctacagaatcctctcagaaaatattccatttcaaaccttcttccctc-aaagcgcaaattttctattttatttgctacaacatccactcatgtcagaaat |
17822333 |
T |
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| Q |
408 |
aaactagcacaaactttcttacttatgttc |
437 |
Q |
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| T |
17822332 |
aaactagcacaaacttgcttacttatgttc |
17822303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 17850978 - 17850908
Alignment:
| Q |
11 |
cagagaatccagttaggcattacatagacaaaggtatagtgtgaacttatcaattgaatttcgatctaata |
81 |
Q |
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||||||||||||||||||||| || | |||| |||| ||| |||||||| || ||||||| ||||||||| |
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| T |
17850978 |
cagagaatccagttaggcattccacaaacaagggtagagtatgaacttaaaaaatgaatttagatctaata |
17850908 |
T |
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