View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_24 (Length: 452)
Name: NF19103_low_24
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 6 - 436
Target Start/End: Original strand, 41042523 - 41042970
Alignment:
| Q |
6 |
agtagcaaagggaggaaacttgaacaagccaagagcaatgaatgctagtttgatggctttgaaaagtgctggagttgaaggggtgatggttgatgtttgg |
105 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41042523 |
agtaacaatgggaggaaacttgaacaagccaagagcaatgaatgctagtttgatggctttgaaaagtgctggagttgaaggggtgatggttgatgtttgg |
41042622 |
T |
|
| Q |
106 |
tggggtttggttgaaaaagatggacctttcaagtataactgggaagcttatgctgagcttgtgcagatggtgcaattgcatggtttgaagcttcaagttg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41042623 |
tggggtttggttgaaaaagatggacctttcaagtataactgggaagcttatgctgagcttgtgcagatggtgcaattgcatggtttgaagcttcaagttg |
41042722 |
T |
|
| Q |
206 |
ttatgtcttttcatcagtgtggaggaaatgttggagattcctgcaggtatgatataacag-----------------tgttttacctgtgaaagatcttt |
288 |
Q |
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| T |
41042723 |
ttatgtcttttcatcagtgtggaggaaatgttggagattcctgcaggtatgatataacagtatacgtgttttgtttttattttacctgtgaaagatcttt |
41042822 |
T |
|
| Q |
289 |
tgtgattcggtgtaactaataattttctttctattgcgaattttcagtgttcctctacctccatgggtgatggaagagatcagcaagaaccctgacattg |
388 |
Q |
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| T |
41042823 |
tgtgattcggtgtaactaataattttctttctattgcgaattttcagtgttcctctacctccatgggtgatggaagagatcagcaagaaccctgacattg |
41042922 |
T |
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| Q |
389 |
tttacacagacagatcagggaggagaaatcctgagtacatctcattgg |
436 |
Q |
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| T |
41042923 |
tttacacagacagatcagggaggagaaatcctgagtacatatcattgg |
41042970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 4365018 - 4364777
Alignment:
| Q |
15 |
gggaggaaacttgaacaagccaagagcaatgaatgctagtttgatggctttgaaaagtgctggagttgaaggggtgatggttgatgtttggtggggtttg |
114 |
Q |
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||||||||| ||||| || |||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||| ||||||||||||| |
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| T |
4365018 |
gggaggaaaattgaataaagcaagagcaatgaatgctagtttgatggctttgaagagtgctggtgttgaaggagtaatggttgatgcttggtggggtttg |
4364919 |
T |
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| Q |
115 |
gttgaaaaagatggacctttcaagtataactgggaagcttatgctgagcttgtgcagatggtgcaattgcatggtttgaagcttcaagttgttatgtctt |
214 |
Q |
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| T |
4364918 |
gtcgaaaaagatggtccaatgaagtataattgggaagcttatgctgaacttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
4364819 |
T |
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| Q |
215 |
ttcatcagtgtggaggaaatgttggagattcctgcaggtatg |
256 |
Q |
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| T |
4364818 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtatg |
4364777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 4372611 - 4372370
Alignment:
| Q |
15 |
gggaggaaacttgaacaagccaagagcaatgaatgctagtttgatggctttgaaaagtgctggagttgaaggggtgatggttgatgtttggtggggtttg |
114 |
Q |
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| T |
4372611 |
gggaggaaaattgaataaagcaagagcaatgaatgctagtttgatggctttgaagagtgctggtgttgaaggagtaatggttgatgcttggtggggtttg |
4372512 |
T |
|
| Q |
115 |
gttgaaaaagatggacctttcaagtataactgggaagcttatgctgagcttgtgcagatggtgcaattgcatggtttgaagcttcaagttgttatgtctt |
214 |
Q |
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|| ||||||||||| || | |||||||| ||||||||||||||||| ||||| |||||||| ||| |||||||||||||||||| |||||||||||| |
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| T |
4372511 |
gtcgaaaaagatggtccaatgaagtataattgggaagcttatgctgaacttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
4372412 |
T |
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| Q |
215 |
ttcatcagtgtggaggaaatgttggagattcctgcaggtatg |
256 |
Q |
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||||||| ||||| ||||||||||| || || |||||||||| |
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| T |
4372411 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtatg |
4372370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 436
Target Start/End: Complemental strand, 4364682 - 4364584
Alignment:
| Q |
338 |
ttcctctacctccatgggtgatggaagagatcagcaagaaccctgacattgtttacacagacagatcagggaggagaaatcctgagtacatctcattgg |
436 |
Q |
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|||||||||| ||||||||| | ||||| ||||| ||||||||||| | ||||||||||||| || ||| || |||||||| || ||||||||||||| |
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| T |
4364682 |
ttcctctaccaccatgggtgctagaagaaatcaggaagaaccctgagttggtttacacagacaaattaggaagaagaaatccagaatacatctcattgg |
4364584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 436
Target Start/End: Complemental strand, 4372274 - 4372176
Alignment:
| Q |
338 |
ttcctctacctccatgggtgatggaagagatcagcaagaaccctgacattgtttacacagacagatcagggaggagaaatcctgagtacatctcattgg |
436 |
Q |
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|||||||||| ||||||||| | ||||| ||||| ||||||||||| | ||||||||||||| || ||| || |||||||| || ||||||||||||| |
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| T |
4372274 |
ttcctctaccaccatgggtgctagaagaaatcaggaagaaccctgagttggtttacacagacaaattaggaagaagaaatccagaatacatctcattgg |
4372176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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