View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19103_low_25 (Length: 452)

Name: NF19103_low_25
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19103_low_25
NF19103_low_25
[»] chr4 (10 HSPs)
chr4 (14-434)||(48105236-48105655)
chr4 (160-239)||(12726995-12727074)
chr4 (160-319)||(19498753-19498917)
chr4 (166-338)||(49194584-49194762)
chr4 (280-333)||(12832564-12832617)
chr4 (167-239)||(17535865-17535937)
chr4 (190-233)||(46610578-46610621)
chr4 (218-318)||(3694056-3694160)
chr4 (272-317)||(33100965-33101010)
chr4 (270-318)||(28067077-28067125)
[»] chr6 (9 HSPs)
chr6 (166-423)||(19249489-19249751)
chr6 (158-289)||(17738793-17738929)
chr6 (159-239)||(13413755-13413835)
chr6 (163-226)||(21606282-21606345)
chr6 (272-317)||(5668353-5668398)
chr6 (177-233)||(31292442-31292498)
chr6 (273-317)||(34600874-34600918)
chr6 (273-317)||(34627419-34627463)
chr6 (273-317)||(34722151-34722195)
[»] chr2 (12 HSPs)
chr2 (159-333)||(37326332-37326511)
chr2 (159-318)||(26245921-26246084)
chr2 (159-318)||(45717759-45717923)
chr2 (163-300)||(1842069-1842210)
chr2 (177-296)||(33411493-33411617)
chr2 (178-292)||(32488365-32488484)
chr2 (293-423)||(34115665-34115798)
chr2 (208-338)||(24220203-24220338)
chr2 (158-239)||(355254-355335)
chr2 (159-390)||(40903541-40903780)
chr2 (167-297)||(18697843-18697978)
chr2 (272-320)||(22863917-22863965)
[»] chr5 (7 HSPs)
chr5 (158-390)||(6023380-6023619)
chr5 (179-315)||(34423302-34423443)
chr5 (177-295)||(36420335-36420458)
chr5 (158-239)||(10460859-10460940)
chr5 (159-338)||(41914325-41914509)
chr5 (270-338)||(42333893-42333961)
chr5 (270-318)||(20252679-20252727)
[»] chr3 (12 HSPs)
chr3 (166-309)||(18378694-18378842)
chr3 (177-318)||(32517684-32517830)
chr3 (161-295)||(15205104-15205242)
chr3 (153-263)||(16176139-16176250)
chr3 (177-295)||(52345019-52345142)
chr3 (167-225)||(36731598-36731656)
chr3 (166-295)||(15244130-15244264)
chr3 (159-338)||(298869-299053)
chr3 (270-327)||(1231709-1231766)
chr3 (272-338)||(35273674-35273740)
chr3 (272-317)||(6893259-6893304)
chr3 (249-320)||(21735234-21735308)
[»] chr1 (8 HSPs)
chr1 (177-297)||(751447-751572)
chr1 (159-318)||(14976061-14976228)
chr1 (159-263)||(32303841-32303947)
chr1 (270-351)||(13112773-13112854)
chr1 (189-318)||(11649770-11649904)
chr1 (166-239)||(16586573-16586646)
chr1 (162-230)||(22158946-22159014)
chr1 (161-338)||(4534025-4534206)
[»] chr7 (9 HSPs)
chr7 (159-336)||(39464986-39465168)
chr7 (160-338)||(13063186-13063369)
chr7 (158-239)||(48778795-48778876)
chr7 (172-338)||(13808515-13808681)
chr7 (272-327)||(41340131-41340186)
chr7 (272-390)||(31396343-31396464)
chr7 (202-336)||(44363103-44363242)
chr7 (278-318)||(20562810-20562850)
chr7 (272-316)||(32482496-32482540)
[»] chr8 (7 HSPs)
chr8 (167-320)||(25109060-25109218)
chr8 (270-338)||(13449166-13449234)
chr8 (172-239)||(3774713-3774780)
chr8 (202-336)||(20128829-20128968)
chr8 (177-239)||(25720145-25720207)
chr8 (270-302)||(23447991-23448023)
chr8 (278-338)||(25320398-25320458)
[»] scaffold0225 (1 HSPs)
scaffold0225 (272-317)||(5571-5616)


Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 434
Target Start/End: Complemental strand, 48105655 - 48105236
Alignment:
Q  14 gaacaaagacacaaattgacactaaagatataggtattcaagtgcaacctcttaatatgtagggggtttagaattcgaactttggctcagaattcaaact 113  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  48105655 gaacaaagacacaaattgacactgaagatatagatattcaagtgcaacctctcaatatgtagggggtttagaattcgaactttggctcagaattcgaact 48105556  T
Q  114 tcgactctacataccatcatatcttatcaagttagctgtatttatggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgt 213  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48105555 tcgactctacataccatcatatcttatcaagttagctatatttatggggggtggtgacgataataggaaaatagcttggataaacttagagtctatttgt 48105456  T
Q  214 actccaaaggaggatggaggtttgggtgaggaggatgggagcttttaattccttgatggggaagtggtgttggaggatgttggtggagatggagggtttg 313  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48105455 actccaaaggaggatggaggtttgggtgaggagggtgggag-ttttaattccttgatggggaagtggtgttggaggatgttggtggagatggagggtttg 48105357  T
Q  314 tggtaccatgttttgaaagcccgtttccgcgaggagggagtagttgaaggaggaggcagccattgttcggcttggtgcaggtcggtgtgttgggttcatg 413  Q
    ||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  48105356 tggtaccatgttttgaaagcccgttacggcgaggagggagcagttgaaggaggaggcagccattattcagcttggtgcaggacggtgtgttgggttcatg 48105257  T
Q  414 aggggttagggaattggtttg 434  Q
    |||||||||||||||||||||    
T  48105256 aggggttagggaattggtttg 48105236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 12727074 - 12726995
Alignment:
Q  160 gggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggtttggg 239  Q
    ||||||||||| |||  ||||||||| ||||||||||| || ||||| |||||||||| ||||||||| |||||||||||    
T  12727074 gggggtggtgaggattttaggaaaattgcttggataaaatgggagtcgatttgtactcgaaaggaggaaggaggtttggg 12726995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 319
Target Start/End: Complemental strand, 19498917 - 19498753
Alignment:
Q  160 gggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagctt 257  Q
    ||||| ||||| ||||| ||||||||| |||||||||| || ||||| ||||||||||||||||||  |||||| ||  |||| ||| || |||| ||||    
T  19498917 ggggggggtgaagataacaggaaaataacttggataaattgggagtcaatttgtactccaaaggagattggagggttgggggttaggcgggtgggtgctt 19498818  T
Q  258 ttaat-tc-ct-tgatggggaagtggtgttggaggatgttggtggagatggagggtttgtggtac 319  Q
    | ||| || || || | |||||||||||||||||||||||||| || | ||| ||| ||||||||    
T  19498817 taaatatcgctctgttagggaagtggtgttggaggatgttggttgataaggatggtctgtggtac 19498753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 338
Target Start/End: Complemental strand, 49194762 - 49194584
Alignment:
Q  166 ggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggagga--tggaggttt--gggtgaggaggatgggagcttttaa 261  Q
    ||||| |||| |||||||||||| |||||||| || || |||||||||  ||||||||||||  |||||| ||  |||| |||||| ||||||  |||||    
T  49194762 ggtgaggatactaggaaaatagcatggataaaatgggaatctatttgtgttccaaaggaggatgtggagggttgggggttaggaggttgggagagtttaa 49194663  T
Q  262 t---tccttgatggggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagcccgtt 338  Q
    |   |||||| ||||||| ||||||| | ||||||||||||| |  ||||| || | ||||| |||||| ||||| ||||    
T  49194662 tttgtccttgttggggaa-tggtgttagcggatgttggtggataaagaggggttatagtaccgtgttttaaaagcacgtt 49194584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 12832564 - 12832617
Alignment:
Q  280 gtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagc 333  Q
    |||||||||||||||||| |||| |||||| |||||||||| ||||||| ||||    
T  12832564 gtgttggaggatgttggttgagaaggaggggttgtggtaccgtgttttggaagc 12832617  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 17535937 - 17535865
Alignment:
Q  167 gtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggtttggg 239  Q
    |||| |||| |||||||||||||||||| || || || |||| ||||  |||||||||||||||||| |||||    
T  17535937 gtgaggatagtaggaaaatagcttggattaaatgggactctagttgtgttccaaaggaggatggagggttggg 17535865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 46610621 - 46610578
Alignment:
Q  190 tggataaactgagagtctatttgtactccaaaggaggatggagg 233  Q
    |||||||| || ||||||||||||||||||||| ||||||||||    
T  46610621 tggataaattgggagtctatttgtactccaaagaaggatggagg 46610578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 318
Target Start/End: Complemental strand, 3694160 - 3694056
Alignment:
Q  218 caaaggaggatggaggtttggg-tgaggaggatgggagcttttaatt---ccttgatggggaagtggtgttggaggatgttggtggagatggagggtttg 313  Q
    |||||||||||||||||| ||| | ||||||||  ||||||||||||   | ||| | || ||||||||||||||| ||||| |||||| |||| | |||    
T  3694160 caaaggaggatggaggttgggggttaggaggatcagagcttttaatttttctttgtttggaaagtggtgttggaggttgttgatggagaaggagagcttg 3694061  T
Q  314 tggta 318  Q
    |||||    
T  3694060 tggta 3694056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 33100965 - 33101010
Alignment:
Q  272 gggaagtggtgttggaggatgttggtggagatggagggtttgtggt 317  Q
    ||||||||||||||| || |||||||||||| |||| |||||||||    
T  33100965 gggaagtggtgttggcgggtgttggtggagaaggagagtttgtggt 33101010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 28067077 - 28067125
Alignment:
Q  270 tggggaagtggtgttggaggatgttggtggagatggagggtttgtggta 318  Q
    |||||||||||||||||||||||||||| || | ||| || ||||||||    
T  28067077 tggggaagtggtgttggaggatgttggttgataaggaagggttgtggta 28067125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 166 - 423
Target Start/End: Complemental strand, 19249751 - 19249489
Alignment:
Q  166 ggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagcttttaat- 262  Q
    ||||| ||||||||||||||| | |||||||| || ||||| |||||||||||||||||||||||||||||  ||||||||| | ||||||||||||||     
T  19249751 ggtgaggataataggaaaatatcctggataaattgggagtcaatttgtactccaaaggaggatggaggtttgggggtgaggaaggtgggagcttttaatt 19249652  T
Q  263 --tccttgatggggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagcccgtttccgcgaggagggagtagttga 360  Q
      ||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||  ||||||||||| ||||| | |||||||||| |  |||||    
T  19249651 tgtccttgatggggaagtggtgttgga-gatgttggtggagagggaggggttgtggtactgtgttttgaaagaccgttacagcgaggagggggcggttga 19249553  T
Q  361 agga-ggaggcagccattgttcggcttggtgcaggtcggtgtgttgggttcatgaggggttagg 423  Q
    |||| ||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||    
T  19249552 aggagggaggcagccattgttcagcttggtggaggtcggtgtgtcgggttcatgaggggttagg 19249489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 289
Target Start/End: Complemental strand, 17738929 - 17738793
Alignment:
Q  158 tggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagc 255  Q
    ||||||||||||| |||||||||||||| ||||||||||| || |||| ||||||||||||||||| ||  |||| |||  |||| ||| |||| || ||    
T  17738929 tggggggtggtgaggataataggaaaattgcttggataaattgggagtatatttgtactccaaagggggtcggagatttgggggttaggcggataggtgc 17738830  T
Q  256 ttttaatt---ccttgatggggaagtggtgttggagg 289  Q
    ||||||||   | ||| |||||||||||||| |||||    
T  17738829 ttttaatttagctttgttggggaagtggtgtcggagg 17738793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 13413835 - 13413755
Alignment:
Q  159 ggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggtttggg 239  Q
    |||||| ||||| || |||||||||||||| |||||||| || || | |||||||  |||||||||||||||||| |||||    
T  13413835 gggggggggtgaggacaataggaaaatagcatggataaaatgggactttatttgtgttccaaaggaggatggaggattggg 13413755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 21606345 - 21606282
Alignment:
Q  163 ggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggagg 226  Q
    |||||||  ||||||||||||||||| ||||| || || ||||||||||||||||| |||||||    
T  21606345 ggtggtgtggataataggaaaatagcctggattaattgggagtctatttgtactcctaaggagg 21606282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 5668398 - 5668353
Alignment:
Q  272 gggaagtggtgttggaggatgttggtggagatggagggtttgtggt 317  Q
    ||||||||||||||| ||||||||||||||| |||  |||||||||    
T  5668398 gggaagtggtgttggcggatgttggtggagaaggatagtttgtggt 5668353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 31292442 - 31292498
Alignment:
Q  177 taggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggagg 233  Q
    ||||||||||||||||||||| || || ||||| |||  |||||| |||||||||||    
T  31292442 taggaaaatagcttggataaaatgggactctatatgtgttccaaacgaggatggagg 31292498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 34600918 - 34600874
Alignment:
Q  273 ggaagtggtgttggaggatgttggtggagatggagggtttgtggt 317  Q
    |||||||||||||| ||||||||||||||| |||| || ||||||    
T  34600918 ggaagtggtgttggcggatgttggtggagagggagagtatgtggt 34600874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 34627463 - 34627419
Alignment:
Q  273 ggaagtggtgttggaggatgttggtggagatggagggtttgtggt 317  Q
    |||||||||||||| ||||||||||||||| |||| || ||||||    
T  34627463 ggaagtggtgttggcggatgttggtggagagggagagtatgtggt 34627419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 34722195 - 34722151
Alignment:
Q  273 ggaagtggtgttggaggatgttggtggagatggagggtttgtggt 317  Q
    |||||||||||||| ||||||||||||||| |||| || ||||||    
T  34722195 ggaagtggtgttggcggatgttggtggagagggagagtatgtggt 34722151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 159 - 333
Target Start/End: Complemental strand, 37326511 - 37326332
Alignment:
Q  159 ggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagct 256  Q
    |||||| || || ||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||| ||  ||||||||||| |||| | |    
T  37326511 gggggggggagaggataataggaaaatagcctggataaattgggagtctatttgtactccaaaggatgatggaggattgggggtgaggagggtgggtgtt 37326412  T
Q  257 tttaa---ttccttgatggggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagc 333  Q
    |||||    || ||| |||||||||||||||||||||||||||| |||| |||||| |||||||||| ||||||||||||    
T  37326411 tttaacttatctttgttggggaagtggtgttggaggatgttggttgagaaggaggggttgtggtaccgtgttttgaaagc 37326332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 159 - 318
Target Start/End: Original strand, 26245921 - 26246084
Alignment:
Q  159 ggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatgga-ggtttgggtgaggaggatgggagctt 257  Q
    |||||||||||| || ||||||||||||  ||||||||| || || |||||||||| ||||||||||| |||| |||| |||||||||||||||||||||    
T  26245921 ggggggtggtgaggaaaataggaaaataaattggataaattgggactctatttgtagtccaaaggaggttggagggttggggtgaggaggatgggagctt 26246020  T
Q  258 ttaat---tccttgatggggaagtggtgttggaggatgttggtggagatggagggtttgtggta 318  Q
    |||||   || ||  | || |||||||||||||||||||||||||| | |||||| || |||||    
T  26246021 ttaatttatcattattaggaaagtggtgttggaggatgttggtggataaggagggattatggta 26246084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 159 - 318
Target Start/End: Complemental strand, 45717923 - 45717759
Alignment:
Q  159 ggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagct 256  Q
    |||||||||||| || ||||||||||||  ||||||||| || || |||||||||| ||||||||||| |||||| ||  ||||||||||||||||||||    
T  45717923 ggggggtggtgaggaaaataggaaaataaattggataaattgggactctatttgtagtccaaaggaggttggagggttgggggtgaggaggatgggagct 45717824  T
Q  257 tttaat---tccttgatggggaagtggtgttggaggatgttggtggagatggagggtttgtggta 318  Q
    ||||||   || ||  | || |||||||||||||||||||||||||| | |||||| || |||||    
T  45717823 tttaatttatcattattaggaaagtggtgttggaggatgttggtggataaggagggattatggta 45717759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 300
Target Start/End: Original strand, 1842069 - 1842210
Alignment:
Q  163 ggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatgga-ggtttgggtgaggaggatgggagcttttaa 261  Q
    |||||||| |||||| ||||||| ||||||||||| |||||||| |||||| ||| ||||||||| ||| |||| |||| |||||  |||||||||||||    
T  1842069 ggtggtgaggataatgggaaaattgcttggataaattgagagtcgatttgttctcaaaaggaggaaggagggttggggttaggagagtgggagcttttaa 1842168  T
Q  262 t---tccttgatggggaagtggtgttggaggatgttggtgga 300  Q
    |   || ||| |||| ||||||||||||||||||||||||||    
T  1842169 tttatctttgttgggaaagtggtgttggaggatgttggtgga 1842210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 177 - 296
Target Start/End: Original strand, 33411493 - 33411617
Alignment:
Q  177 taggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagcttttaat---tccttgatg 271  Q
    ||||||||| |||| |||||| || ||||| |||||||||||||||||||| ||||| ||  ||||||||||| ||||||||||||||    | ||| ||    
T  33411493 taggaaaattgcttagataaattgggagtcgatttgtactccaaaggaggacggagggttgggggtgaggagggtgggagcttttaatatggcgttggtg 33411592  T
Q  272 gggaagtggtgttggaggatgttgg 296  Q
    |||||||||||||||||||||||||    
T  33411593 gggaagtggtgttggaggatgttgg 33411617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 178 - 292
Target Start/End: Complemental strand, 32488484 - 32488365
Alignment:
Q  178 aggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagcttttaat---tccttgatgg 272  Q
    |||||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||  |||| |||||  ||||||||||||||   || ||| |||    
T  32488484 aggaaaatagcttggataaattgggagtatatttgtactccaaaggaggatggagggttgggggttaggagagtgggagcttttaatttatctttgttgg 32488385  T
Q  273 ggaagtggtgttggaggatg 292  Q
    ||||| ||||||||||||||    
T  32488384 ggaagcggtgttggaggatg 32488365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 293 - 423
Target Start/End: Original strand, 34115665 - 34115798
Alignment:
Q  293 ttggtggagatggagggtttgtggtaccatgttttgaaagcccgtttccgcgaggagggag--tagttgaagga-ggaggcagccattgttcggcttggt 389  Q
    |||||||||| |||||| |||||||| ||||||||||| ||||||| | | |||||||| |   |||||||||| ||||| |||||||||||||||||||    
T  34115665 ttggtggagagggaggggttgtggtagcatgttttgaaggcccgttacggtgaggaggggggccagttgaaggagggaggtagccattgttcggcttggt 34115764  T
Q  390 gcaggtcggtgtgttgggttcatgaggggttagg 423  Q
    | |  ||| ||||| |||||| ||||||||||||    
T  34115765 ggacatcgttgtgtagggttcgtgaggggttagg 34115798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 208 - 338
Target Start/End: Original strand, 24220203 - 24220338
Alignment:
Q  208 atttgtactccaaaggaggatggaggtttgggtg--aggaggatgggagcttttaatt---ccttgatggggaagtggtgttggaggatgttggtggaga 302  Q
    ||||||||||||||||||||| |||| ||||| |  |||||||| || || | |||||   ||||| | || ||||||||||||||||||||| | || |    
T  24220203 atttgtactccaaaggaggatagagggttgggagttaggaggatcggtgcgtataatttatccttgttaggtaagtggtgttggaggatgttgattgata 24220302  T
Q  303 tggagggtttgtggtaccatgttttgaaagcccgtt 338  Q
     ||||||| ||||||| | ||| |||||||||||||    
T  24220303 gggagggtctgtggtatcgtgtattgaaagcccgtt 24220338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 355254 - 355335
Alignment:
Q  158 tggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggtttggg 239  Q
    |||||||  |||| |||||||||||||| || |||||||| || || |||||||||  ||||||||||||||| ||||||||    
T  355254 tgggggggagtgaggataataggaaaattgcatggataaaatgggactctatttgtgttccaaaggaggatggtggtttggg 355335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 390
Target Start/End: Original strand, 40903541 - 40903780
Alignment:
Q  159 ggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggagg--tttgggtgaggaggatgggagct 256  Q
    |||||||||||| |||  ||| |||||  ||||||| || || ||||| |||||||||||||||||||| |||||  |  |||| | || | |||| |||    
T  40903541 ggggggtggtgaggattttagaaaaatttcttggattaattgggagtccatttgtactccaaaggaggaaggagggctgagggttaagaaggtgggggct 40903640  T
Q  257 tttaat---tccttgatggggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagcccgtttccgcga--ggaggg 351  Q
    || |||   || ||| |||| || ||||||||||||||| |||| || | |||||| |||||||||   || |||| |||||||| | ||||   |||||    
T  40903641 ttcaatttatcgttgttgggtaaatggtgttggaggatgctggttgataaggagggattgtggtacagggtcttgagagcccgttacggcgaagagaggg 40903740  T
Q  352 agtagttg-aaggaggaggcagccattgttcggcttggtg 390  Q
     |  |||| ||| |||||| ||||||||||||||||||||    
T  40903741 ggcggttgaaagaaggaggtagccattgttcggcttggtg 40903780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 297
Target Start/End: Complemental strand, 18697978 - 18697843
Alignment:
Q  167 gtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagcttttaat-- 262  Q
    |||| |||||||| |||||||||||||||||  | ||||  || ||||||||||||||| | ||||| ||  |||| |||||| ||||  ||||||||      
T  18697978 gtgaggataatagaaaaatagcttggataaatcgggagtgaatatgtactccaaaggagaaaggagggttgggggttaggagggtgggttcttttaatgt 18697879  T
Q  263 -tccttgatggggaagtggtgttggaggatgttggt 297  Q
      | ||| | || |||||||||||||||||||||||    
T  18697878 agctttgttaggaaagtggtgttggaggatgttggt 18697843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 22863965 - 22863917
Alignment:
Q  272 gggaagtggtgttggaggatgttggtggagatggagggtttgtggtacc 320  Q
    |||||||||||||||||||||||||  || | |||||| ||||||||||    
T  22863965 gggaagtggtgttggaggatgttgggtgataaggaggggttgtggtacc 22863917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 158 - 390
Target Start/End: Complemental strand, 6023619 - 6023380
Alignment:
Q  158 tggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagc 255  Q
    |||| |||||||| |||  ||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||| ||  |||| | ||||||||| ||    
T  6023619 tgggtggtggtgaggatcttaggaaaattgcttggataaattgggagtctatttgtactccaaaggaggaaggagggttgagggttaagaggatgggtgc 6023520  T
Q  256 ttttaat---tccttgatggggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagcccgtttccgcgaggaggga 352  Q
     ||||||   || || ||||| || ||||| ||||||||| | || || |  |||||||||||||||| |||||||||||| || | | | ||||||||     
T  6023519 ctttaatttatctttaatgggtaaatggtgctggaggatgatagttgacaaagagggtttgtggtaccgtgttttgaaagctcggtacggagaggagggg 6023420  T
Q  353 gta-gttgaagga-ggaggcagccattgttcggcttggtg 390  Q
    ||| |||||| || || || ||||||||||||||||||||    
T  6023419 gtaggttgaaagagggtgggagccattgttcggcttggtg 6023380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 179 - 315
Target Start/End: Original strand, 34423302 - 34423443
Alignment:
Q  179 ggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggtttggg--tgaggaggatgggagcttttaatt---ccttgatggg 273  Q
    |||||||||| | |||||| ||  ||||||||||||||| ||||||||||| ||| |||||  |||||||| |||||||||||||||   | |||||||     
T  34423302 ggaaaatagcatagataaattggaagtctatttgtactctaaaggaggatgaagggttgggggtgaggagggtgggagcttttaatttatctttgatgga 34423401  T
Q  274 gaagtggtgttggaggatgttggtggagatggagggtttgtg 315  Q
     |||||||||||||||||||||||||||| |||||| |||||    
T  34423402 aaagtggtgttggaggatgttggtggagaaggaggggttgtg 34423443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 177 - 295
Target Start/End: Complemental strand, 36420458 - 36420335
Alignment:
Q  177 taggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagcttttaatt---ccttgatg 271  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||| | ||||| ||  |||||||||||||||||||||||||||   | ||| ||    
T  36420458 taggaaaattgcttggataaattgggagtcgatttgtactccaaaggagcacggagggttgggggtgaggaggatgggagcttttaatttggcgttggtg 36420359  T
Q  272 gggaagtggtgttggaggatgttg 295  Q
     |||||||||||||||||||||||    
T  36420358 cggaagtggtgttggaggatgttg 36420335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 10460940 - 10460859
Alignment:
Q  158 tggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggtttggg 239  Q
    |||||||  |||| |||||||||||||| ||||||||||| || || |||||||||  ||||||||||||||||||||||||    
T  10460940 tggggggaagtgaggataataggaaaattgcttggataaaatgggattctatttgtgttccaaaggaggatggaggtttggg 10460859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 338
Target Start/End: Complemental strand, 41914509 - 41914325
Alignment:
Q  159 ggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagct 256  Q
    ||||||||||||  ||  ||||||||| ||||||||||  || ||||| || ||||||||||||||||| ||||| ||  |||| | |||| |||| |||    
T  41914509 ggggggtggtgagaattttaggaaaattgcttggataaggtgggagtcaatctgtactccaaaggaggaaggaggattgggggttaagaggttgggtgct 41914410  T
Q  257 tttaat---tccttgatggggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagcccgtt 338  Q
    ||||||   || || ||||| || ||||||||||||||| |||| || |  ||||| ||||||||||  ||||| ||||| ||||    
T  41914409 tttaatttatctttaatgggtaaatggtgttggaggatgatggttgacaaagagggattgtggtaccgagttttaaaagctcgtt 41914325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 42333961 - 42333893
Alignment:
Q  270 tggggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagcccgtt 338  Q
    |||| ||||||||||||||| ||||| |||||| |||||| |||||||||| ||| |||||| ||||||    
T  42333961 tgggaaagtggtgttggaggttgttgttggagaaggaggggttgtggtaccgtgtgttgaaaacccgtt 42333893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 20252727 - 20252679
Alignment:
Q  270 tggggaagtggtgttggaggatgttggtggagatggagggtttgtggta 318  Q
    |||||||||||||||||||||||||||| || | ||| || ||||||||    
T  20252727 tggggaagtggtgttggaggatgttggtagataaggaagggttgtggta 20252679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 166 - 309
Target Start/End: Complemental strand, 18378842 - 18378694
Alignment:
Q  166 ggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagcttttaat- 262  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| |||| ||||||  | || |||| | |||| |||||||||     
T  18378842 ggtgaggataataggaaaatagcttggataaattgggagtctatttgtactccaaaggacgatgaaggtttgagagttaggaaggtgggtgcttttaatt 18378743  T
Q  263 --tccttgatggggaagtggtgttggaggatgttggtggagatggaggg 309  Q
      ||  || |||| |||||||||||||||||||||||| ||| ||||||    
T  18378742 tatctatgttgggtaagtggtgttggaggatgttggtgtagaaggaggg 18378694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 318
Target Start/End: Complemental strand, 32517830 - 32517684
Alignment:
Q  177 taggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagcttttaa---ttccttgatg 271  Q
    |||||||||  |||||||||| || |||||||||||||||||||||||||||||||| ||  |||| |||||| | || ||||||||       ||| ||    
T  32517830 taggaaaatttcttggataaattgggagtctatttgtactccaaaggaggatggagggttgggggttaggagggttggtgcttttaacatggtgttggtg 32517731  T
Q  272 gggaagtggtgttggaggatgttggtggagatggagggtttgtggta 318  Q
    |||||||||||||||||||||||| | |||| |||||| ||||||||    
T  32517730 gggaagtggtgttggaggatgttgattgagaaggaggggttgtggta 32517684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 295
Target Start/End: Original strand, 15205104 - 15205242
Alignment:
Q  161 ggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagcttt 258  Q
    |||| ||||| |||| |||||||||||| || || || || ||||||||||||||||  ||||||||||| |||||  |||| |||||| |||||| |||    
T  15205104 gggggggtgaggatagtaggaaaatagcctgaattaattgggagtctatttgtactcttaaggaggatggtggtttgggggttaggagggtgggagattt 15205203  T
Q  259 taat--tccttgatggggaagtggtgttggaggatgttg 295  Q
    ||||  | ||| ||  |||||||||||||||||||||||    
T  15205204 taatacttctttattaggaagtggtgttggaggatgttg 15205242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 263
Target Start/End: Original strand, 16176139 - 16176250
Alignment:
Q  153 atttatggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggtttggg-tgaggaggatgg 251  Q
    ||||| |||||| ||||| || ||||| ||||||||||||||||| || || ||||| |||  |||||||||||||||||| ||||| || ||||| | |    
T  16176139 atttaggggggggggtgaggaaaatagtaaaatagcttggataaaatgggactctatctgtgttccaaaggaggatggagggttgggctgcggaggttag 16176238  T
Q  252 gagcttttaatt 263  Q
    ||||||||||||    
T  16176239 gagcttttaatt 16176250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 295
Target Start/End: Complemental strand, 52345142 - 52345019
Alignment:
Q  177 taggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagcttttaat---tccttgatg 271  Q
    ||||||||| |||||||| || || ||||  |||||||||||||||||||| || || ||  ||||||||||| ||||||||||||||    |  || ||    
T  52345142 taggaaaattgcttggattaattgggagttgatttgtactccaaaggaggacggggggttgggggtgaggagggtgggagcttttaatatggcgctggtg 52345043  T
Q  272 gggaagtggtgttggaggatgttg 295  Q
    ||||||||||||||||||||||||    
T  52345042 gggaagtggtgttggaggatgttg 52345019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 36731656 - 36731598
Alignment:
Q  167 gtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggag 225  Q
    |||| |||||||||||||||||||||||||| || ||||| || |||||||||||||||    
T  36731656 gtgaggataataggaaaatagcttggataaattgggagtcaatatgtactccaaaggag 36731598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 295
Target Start/End: Original strand, 15244130 - 15244264
Alignment:
Q  166 ggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagcttttaa-- 261  Q
    ||||| |||| |||||||||||| || || || || ||||||||||||||||  ||||||||||| |||||  |||| ||| || |||||| ||||||      
T  15244130 ggtgaggatagtaggaaaatagcctgaattaattgggagtctatttgtactcttaaggaggatggtggttttggggttaggtgggtgggagattttaata 15244229  T
Q  262 -ttccttgatggggaagtggtgttggaggatgttg 295  Q
     ||| ||  | ||||||||||||||||||||||||    
T  15244230 cttcttttttagggaagtggtgttggaggatgttg 15244264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 338
Target Start/End: Original strand, 298869 - 299053
Alignment:
Q  159 ggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagct 256  Q
    |||||||||||| ||| |||||||||||||||||||||| || || ||| |||||   || ||| |||||||||| ||  |||| |||||  | ||||      
T  298869 ggggggtggtgaggatcataggaaaatagcttggataaattgggactctgtttgtgtcccgaagtaggatggagggttgggggttaggagactaggagag 298968  T
Q  257 tttaat---tccttgatggggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagcccgtt 338  Q
    ||||||    | ||| ||||||| ||||||||||||||| ||   || | |||| |||||||||||| ||||||||| |||||||    
T  298969 tttaatatggcgttgttggggaaatggtgttggaggatgctgactgataaggagtgtttgtggtaccgtgttttgaaggcccgtt 299053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 327
Target Start/End: Original strand, 1231709 - 1231766
Alignment:
Q  270 tggggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgtttt 327  Q
    ||||||| ||||||||||||||||||||||| |  ||||| |||||||||| ||||||    
T  1231709 tggggaaatggtgttggaggatgttggtggaaaaagaggggttgtggtaccgtgtttt 1231766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 35273740 - 35273674
Alignment:
Q  272 gggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagcccgtt 338  Q
    |||||||||||||||| ||||||||| || | |||||| |||||||||| ||| || ||||| ||||    
T  35273740 gggaagtggtgttggaagatgttggttgataaggaggggttgtggtaccgtgtattaaaagcacgtt 35273674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 6893259 - 6893304
Alignment:
Q  272 gggaagtggtgttggaggatgttggtggagatggagggtttgtggt 317  Q
    ||||||||||||||| ||||||||||||||| |||  |||||||||    
T  6893259 gggaagtggtgttggcggatgttggtggagaaggatagtttgtggt 6893304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 21735234 - 21735308
Alignment:
Q  249 tgggagcttttaatt---ccttgatggggaagtggtgttggaggatgttggtggagatggagggtttgtggtacc 320  Q
    |||||||||||||||   | ||| |||| |||||||||||||| |||||||||||||  ||||| || |||||||    
T  21735234 tgggagcttttaatttatctttgttgggaaagtggtgttggagaatgttggtggagaaagaggggttatggtacc 21735308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 177 - 297
Target Start/End: Complemental strand, 751572 - 751447
Alignment:
Q  177 taggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagcttttaat---tccttgatg 271  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||||| ||||| ||  ||||||||||| ||||||||||||||    | ||| ||    
T  751572 taggaaaattgcttggataaattgggagtcgatttgtactccaaaggaggacggagggttgggggtgaggagggtgggagcttttaatatggcgttggtg 751473  T
Q  272 gggaagtggtgttggaggatgttggt 297  Q
    ||||||||||| ||||||||||||||    
T  751472 gggaagtggtgctggaggatgttggt 751447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 159 - 318
Target Start/End: Original strand, 14976061 - 14976228
Alignment:
Q  159 ggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggagg-----tttgggtgaggaggatggga 253  Q
    |||||||||||| || ||||||||||||  ||||||||| || || |||||||||| ||||||||||| ||||||     |  |||||||||||||||||    
T  14976061 ggggggtggtgaggaaaataggaaaataaattggataaattgggactctatttgtagtccaaaggaggttggaggagggttgggggtgaggaggatggga 14976160  T
Q  254 gcttttaat---tccttgatggggaagtggtgttggaggatgttggtggagatggagggtttgtggta 318  Q
    |||||||||   || ||  | || |||||||||||||||||||||||||| | |||||| || |||||    
T  14976161 gcttttaatttatcattattaggaaagtggtgttggaggatgttggtggataaggagggattatggta 14976228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 32303947 - 32303841
Alignment:
Q  159 ggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagct 256  Q
    |||||||||||| |||  ||||||||| ||||||||||| || ||||| |||||||||||||||||||| ||||||||  |||| |||||||| || |||    
T  32303947 ggggggtggtgaggattttaggaaaattgcttggataaaatgggagtcgatttgtactccaaaggaggaaggaggtttgggggttaggaggataggcgct 32303848  T
Q  257 tttaatt 263  Q
    |||||||    
T  32303847 tttaatt 32303841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 13112773 - 13112854
Alignment:
Q  270 tggggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagcccgtttccgcgaggaggg 351  Q
    ||||||| ||||||||||||||||||||||| |  ||||| |||||||||| |||||| ||||| |||| | | ||||||||    
T  13112773 tggggaaatggtgttggaggatgttggtggacaaagaggggttgtggtaccgtgttttaaaagcacgttacggagaggaggg 13112854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 11649904 - 11649770
Alignment:
Q  189 ttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagctttta--attcct-tgatggggaagtggtgt 283  Q
    |||||||||||| ||||| |||||||||||||||||| ||||||  ||  |||| ||| ||| ||| ||||| |  ||| || || | ||||||||||||    
T  11649904 ttggataaactgggagtcaatttgtactccaaaggagaatggagagttgggggttaggcggaagggtgctttcaatattgctctgttagggaagtggtgt 11649805  T
Q  284 tggaggatgttggtggagatggagggtttgtggta 318  Q
    |||||||||||||| || | ||| |||||||||||    
T  11649804 tggaggatgttggttgataaggatggtttgtggta 11649770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 16586573 - 16586646
Alignment:
Q  166 ggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggtttggg 239  Q
    ||||| |||| ||||||||| || | |||||| || || || ||||||||||||||||||||||| ||||||||    
T  16586573 ggtgaggatattaggaaaattgcctagataaattgggattcgatttgtactccaaaggaggatggtggtttggg 16586646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 22159014 - 22158946
Alignment:
Q  162 gggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatgg 230  Q
    ||||||||| |||| || ||||||||| ||||| || ||  |||||||||||||||| |||||||||||    
T  22159014 gggtggtgaggatagtaagaaaatagcctggattaattggaagtctatttgtactcctaaggaggatgg 22158946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 338
Target Start/End: Original strand, 4534025 - 4534206
Alignment:
Q  161 ggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggtttggg-tgaggaggatgggagctttt 259  Q
    |||||||||| |||  |||||||||| |||||||||| || || || ||||||   || |||||||| || |||| ||| | |||| | |||||||||||    
T  4534025 ggggtggtgaggattctaggaaaatatcttggataaaatgggattcaatttgtttacctaaggaggaagggggttgggggttaggaaggtgggagctttt 4534124  T
Q  260 aatt---ccttgatggggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagcccgtt 338  Q
    || |   | ||| |||||||||||||||||||| || ||   |||| |||||| ||||||||   ||| |||||||||||||    
T  4534125 aacttatctttgttggggaagtggtgttggaggttggtgaatgagagggaggggttgtggtatagtgtgttgaaagcccgtt 4534206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 159 - 336
Target Start/End: Complemental strand, 39465168 - 39464986
Alignment:
Q  159 ggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggtttgggtg--aggaggatgggagct 256  Q
    |||||||||||| |||  ||||||||| |||||||| || || || ||  ||||||||||||||||||| ||||| ||||| |  |||||| | |||||     
T  39465168 ggggggtggtgaggattttaggaaaattgcttggattaattgggattcggtttgtactccaaaggaggaaggagggttgggggttaggagggttggagca 39465069  T
Q  257 tttaatt---ccttgatggggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagcccg 336  Q
    |||||||   | ||  |||| ||||||||||||||||||||||| || | ||||||||| |||||||  ||||||||||||||    
T  39465068 tttaatttatctttattgggtaagtggtgttggaggatgttggttgataaggagggtttatggtaccgggttttgaaagcccg 39464986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 338
Target Start/End: Original strand, 13063186 - 13063369
Alignment:
Q  160 gggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagctt 257  Q
    |||||| |||| |||||||| ||||| || ||||| || || ||||| |||||||||||||||||||||||||||||  |||| |||||| | ||||  |    
T  13063186 gggggttgtgaggataatagaaaaatcgcgtggatcaaatgggagtcaatttgtactccaaaggaggatggaggtttgagggttaggagggtaggagtct 13063285  T
Q  258 ttaat---tccttgatggggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagcccgtt 338  Q
    |||||   || ||| | || ||||||||||||||||||||| | || | ||||||  ||||||| |  || |||||||||||||    
T  13063286 ttaatttatcattgttaggtaagtggtgttggaggatgttgattgataaggagggcctgtggtatcgagtattgaaagcccgtt 13063369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 48778876 - 48778795
Alignment:
Q  158 tggggggtggtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggtttggg 239  Q
    |||||||  |||| |||||||||||||| || |||||||| || || |||||||||  ||||||||||||||| ||||||||    
T  48778876 tgggggggagtgaggataataggaaaattgcatggataaaatgggactctatttgtgttccaaaggaggatgggggtttggg 48778795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 338
Target Start/End: Complemental strand, 13808681 - 13808515
Alignment:
Q  172 gataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggtttgggtgaggaggatgggagcttttaatt---ccttg 268  Q
    ||||||||||||||||| ||||| || ||  | |||||||||   || |||||||| ||  ||| |||| ||||||||  ||||||||||||   |||||    
T  13808681 gataataggaaaatagcatggattaaatggaattctatttgtttacctaaggaggaggg--gttggggttaggaggattagagcttttaatttttccttg 13808584  T
Q  269 atggggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagcccgtt 338  Q
     |||| ||||||||||||| |||||||  ||||| |||| | ||||||||||  || |||||||||||||    
T  13808583 ttgggaaagtggtgttggaagatgttgaaggagaaggagaggttgtggtacc-ggtgttgaaagcccgtt 13808515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 41340186 - 41340131
Alignment:
Q  272 gggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgtttt 327  Q
    ||||| ||||||||||||||||| ||||| |  || ||||||||||||||||||||    
T  41340186 gggaaatggtgttggaggatgttagtggatagagaaggtttgtggtaccatgtttt 41340131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 390
Target Start/End: Complemental strand, 31396464 - 31396343
Alignment:
Q  272 gggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagcccgtttccgcgaggaggga--gtagttgaagga-ggag 368  Q
    |||||||||||||||||||||||||| || | ||| ||| |||||||||  || |||||||| || | | | |||||||||  |   ||||| || ||||    
T  31396464 gggaagtggtgttggaggatgttggttgataaggatggtctgtggtaccgagtcttgaaagctcggtacggggaggagggagggcgtttgaaagagggag 31396365  T
Q  369 gcagccattgttcggcttggtg 390  Q
    |||||||||| |||||||||||    
T  31396364 gcagccattgctcggcttggtg 31396343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 336
Target Start/End: Complemental strand, 44363242 - 44363103
Alignment:
Q  202 gagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagcttttaat---tccttgatggggaagtggtgttggaggatgttgg 296  Q
    ||||| |||||||||||||||||||||||||| ||  |||| |||||| |  | || ||||||   |||||  | || |||||||||||||||||||||     
T  44363242 gagtcgatttgtactccaaaggaggatggagggttgggggttaggagggtcagtgcgtttaatttatccttattaggtaagtggtgttggaggatgttga 44363143  T
Q  297 tggagatggagggtttgtggtaccatgttttgaaagcccg 336  Q
    | || | ||||||| ||||||| |  || |||||||||||    
T  44363142 ttgatagggagggtatgtggtatcgagtattgaaagcccg 44363103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 20562850 - 20562810
Alignment:
Q  278 tggtgttggaggatgttggtggagatggagggtttgtggta 318  Q
    ||||||||||||||||||||||| ||| |||| ||||||||    
T  20562850 tggtgttggaggatgttggtggacatgaagggattgtggta 20562810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 32482496 - 32482540
Alignment:
Q  272 gggaagtggtgttggaggatgttggtggagatggagggtttgtgg 316  Q
    ||||||||||||||||||||||| || || || ||||||||||||    
T  32482496 gggaagtggtgttggaggatgttagtagatatagagggtttgtgg 32482540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 320
Target Start/End: Original strand, 25109060 - 25109218
Alignment:
Q  167 gtgacgataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagcttttaat-- 262  Q
    |||| ||| |||||||||| ||||||||||| || ||||| ||||| |||||||||||||| ||||| ||  |||| ||| || |||| || ||||||      
T  25109060 gtgaggattataggaaaattgcttggataaaatgggagtccatttgcactccaaaggaggaaggagggttgggggttaggtgggtgggtgcctttaattt 25109159  T
Q  263 -tccttgatggggaagtggtgttggaggatgttggtggagatggagggtttgtggtacc 320  Q
     || || ||||| || |||||  |||||||||||||||| | |||||  ||||||||||    
T  25109160 atctttaatgggtaaatggtggcggaggatgttggtggaaaaggaggaattgtggtacc 25109218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 13449234 - 13449166
Alignment:
Q  270 tggggaagtggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagcccgtt 338  Q
    ||||||||||||||||||||||||||   || | ||||||||||||||| | ||||||||| |||||||    
T  13449234 tggggaagtggtgttggaggatgttgtccgacaaggagggtttgtggtatcgtgttttgaaggcccgtt 13449166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 3774780 - 3774713
Alignment:
Q  172 gataataggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggtttggg 239  Q
    |||| |||||||||||||||||| || || |  |||||||||| |||||||||||||||||| |||||    
T  3774780 gatagtaggaaaatagcttggattaaatgcggctctatttgtattccaaaggaggatggagggttggg 3774713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 336
Target Start/End: Original strand, 20128829 - 20128968
Alignment:
Q  202 gagtctatttgtactccaaaggaggatggaggttt--gggtgaggaggatgggagcttttaat---tccttgatggggaagtggtgttggaggatgttgg 296  Q
    ||||| |||||||||||||||||||||||||| ||  |||| |||||| |  | || ||||||   |||||  | || |||||||||||||||||||||     
T  20128829 gagtcgatttgtactccaaaggaggatggagggttgggggttaggagggtcagtgcgtttaatttatccttattaggtaagtggtgttggaggatgttga 20128928  T
Q  297 tggagatggagggtttgtggtaccatgttttgaaagcccg 336  Q
    | || | ||||||| ||||||| |  || |||||||||||    
T  20128929 ttgatagggagggtatgtggtatcgagtattgaaagcccg 20128968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 25720145 - 25720207
Alignment:
Q  177 taggaaaatagcttggataaactgagagtctatttgtactccaaaggaggatggaggtttggg 239  Q
    ||||||| || |||||||||| || ||||| |||||||||||||| ||||||| ||| |||||    
T  25720145 taggaaactatcttggataaattgggagtcgatttgtactccaaacgaggatgaagggttggg 25720207  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 23448023 - 23447991
Alignment:
Q  270 tggggaagtggtgttggaggatgttggtggaga 302  Q
    ||||||||||||||||||||||||||| |||||    
T  23448023 tggggaagtggtgttggaggatgttggaggaga 23447991  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 25320458 - 25320398
Alignment:
Q  278 tggtgttggaggatgttggtggagatggagggtttgtggtaccatgttttgaaagcccgtt 338  Q
    ||||||||||||||||||||||| |  ||||| |||||||||  |||||| ||||| ||||    
T  25320458 tggtgttggaggatgttggtggacaaagaggggttgtggtactgtgttttaaaagcacgtt 25320398  T

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Target: scaffold0225 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 5571 - 5616
Alignment:
Q  272 gggaagtggtgttggaggatgttggtggagatggagggtttgtggt 317  Q
    ||||||||||||||| || |||||||||||| |||| |||||||||    
T  5571 gggaagtggtgttggcgggtgttggtggagaaggagagtttgtggt 5616  T

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