View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_29 (Length: 444)
Name: NF19103_low_29
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_29 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 444
Target Start/End: Complemental strand, 40980667 - 40980233
Alignment:
| Q |
15 |
cataggcatcaagattgagatgtgtatattgacccttcaaattgaagcagcctaataaaccccttttcagttcaccgagacgtactttgtaggacacttc |
114 |
Q |
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| T |
40980667 |
cataggcatcaagattgagatgtgtatattgacccttcaaattgaagcagcctaataa-ccccttttaagttcaccgagacgtactttgtaggacacttc |
40980569 |
T |
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| Q |
115 |
caaaccaacaaaggcagttcaattaatttccaagaaaatatgtccctcatctttgtgtcacgactcttttgattttctctgtgtatgaatagatgaattc |
214 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40980568 |
caaaccaacaaaggcacttcaattaatttccaagaaaatatgtccctcatctttgtgtcacgactcttttgattttctctgtgtatgaatagatgaattc |
40980469 |
T |
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| Q |
215 |
atgtacatagtccaaagtcagtaaaatgaaaaacaaagtactcctttgttcgatgttccaagaaactacc------nnnnnnnnnnnnnnnnaaaactaa |
308 |
Q |
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| T |
40980468 |
atgtacatagtccaaagtcagtaaaatgaaaaacaaagtactcctttgttcgatgttccaagaaactaccttttttttttattttattttttaaaactaa |
40980369 |
T |
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| Q |
309 |
agagcaaacnnnnnnnncaaggacaaaacaaggaattggacaagacttggcatcgttatttgatgttaagtcttctcattgaaattcaattatagaaaat |
408 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40980368 |
agagcaaacaaaaaaaacaaggacaaaacaaggaattggacaagacttggcatcgttatttgatgtaaagtcttctcattgaaattcaattatagaaaat |
40980269 |
T |
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| Q |
409 |
tatatcaaagtggtggaactcaattcaaagctaaac |
444 |
Q |
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| T |
40980268 |
tatatcaaagtggtggaactcaattcaaagctaaac |
40980233 |
T |
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