View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_3 (Length: 705)
Name: NF19103_low_3
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 674; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 10 - 687
Target Start/End: Original strand, 6565254 - 6565931
Alignment:
| Q |
10 |
ataatactttgaaaaaaggacgtcgagaaaggaaaatggctttgatacaagatgtgagtgtaacatattccttgcattattaattgttctacacatcatt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565254 |
ataatactttgaaaaaaggacgtcgagaaaggaaaatggctttgatacaagatgtgagtgtaacatattccttgcattattaattgttctacacatcatt |
6565353 |
T |
|
| Q |
110 |
tgcaatttttcagtgtagttattatgctgctcgaaatttgcaggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565354 |
tgcaatttttcagtgtagttattatgctgctcgaaatttgcaggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaa |
6565453 |
T |
|
| Q |
210 |
agagcactcactagacctttgggcgcacttcctcgtcttcctccttatctcccttcccatgtaagtagattaagtcagtgatcgatcaattgtattcact |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565454 |
agagcactcactagacctttgggcgcacttcctcgtcttcctccttatctcccttcccatgtaagtagattaagtcagtgatcgatcaattgtattcact |
6565553 |
T |
|
| Q |
310 |
atatctcactgatcaattgtattcaatgcatttggtatatatcttaattagaattaagtttttgatctttgatatctatagacatcgaaagtaagaaaaa |
409 |
Q |
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| T |
6565554 |
atatctcactgatcaattgtattcaatgcatttggtatatatcttaattagaattaagtttttgatctttgatatctatagacatcgaaagtaagaaaaa |
6565653 |
T |
|
| Q |
410 |
ctgtgtattgtgtattttagacgttagagcttgtggctgaagttgcggtattggaggaagaggtggttcgattagaagagaaggttgtgaatttcagaca |
509 |
Q |
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| T |
6565654 |
ctgtgtattgtgtattttagacgttagagcttgtggctgaagttgcggtattggaggaagaggtggttcgattagaagagaaggttgtgaatttcagaca |
6565753 |
T |
|
| Q |
510 |
aggtttatatcaggaagctgtgtacatttcctccaagaggaatgcagaaaattcgattgactccattgagcagaattccatcaaaggatccaaacatcaa |
609 |
Q |
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| T |
6565754 |
aggtttatatcaggaagctgtgtacatttcctccaagaggaatgcagaaaattcgattgactccattgagcagaattccatcaaaggatccaaacatcaa |
6565853 |
T |
|
| Q |
610 |
aggtcaaaatcattgtctcaaagtgagcttaattctactaccactaggcctcagatttctcttgccaaaagtgcttct |
687 |
Q |
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| T |
6565854 |
aggtcaaaatcattgtctcaaagtgagcttaattctactaccactaggcctcagatttctcttgccataagtgcttct |
6565931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 436 - 562
Target Start/End: Complemental strand, 34260974 - 34260848
Alignment:
| Q |
436 |
gagcttgtggctgaagttgcggtattggaggaagaggtggttcgattagaagagaaggttgtgaatttcagacaaggtttatatcaggaagctgtgtaca |
535 |
Q |
| |
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|||||| | |||||||| || || ||||||||||| |||||| | | ||||| | ||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
34260974 |
gagcttctagctgaagtggcagtgttggaggaagaagtggttaggcttgaagaacaagttgtgaatttcagacaaggtttatatcaagaagctgtttaca |
34260875 |
T |
|
| Q |
536 |
tttcctccaagaggaatgcagaaaatt |
562 |
Q |
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| T |
34260874 |
tttcctcaaagagaaatgctgaaaatt |
34260848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 34261499 - 34261390
Alignment:
| Q |
150 |
caggttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaaagagcactcactagacctttgggcgcacttcctcgtcttc |
249 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| | || |||||||| || | | |||||||||| |
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| T |
34261499 |
caggtagataagttgaagaggaagctaagacatgaagagaatgttcacagagctttagaaagagcatttacaagacctttaggatctttgcctcgtcttc |
34261400 |
T |
|
| Q |
250 |
ctccttatct |
259 |
Q |
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|||||||||| |
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| T |
34261399 |
ctccttatct |
34261390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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