View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_33 (Length: 428)
Name: NF19103_low_33
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 287
Target Start/End: Complemental strand, 7980550 - 7980277
Alignment:
| Q |
14 |
atatacactatttgtaaaatatatacactatttgtaaaagtttgccttttaggagaactacattttcgacccgtgtgacgtactggtcctatcgaccgtt |
113 |
Q |
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| T |
7980550 |
atatacactatttgtaaaatatatatactatttgtaaaagtttgccttttaggagaactacattttcgacccgtgcgatgtactggtcctatcgaccgtt |
7980451 |
T |
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| Q |
114 |
ataatgatcaataagttatatttgacatgtatcatatatctgtctatcgaaaaacacaaatatgattattagatgattgtttccaccatgtgcaaatttg |
213 |
Q |
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| T |
7980450 |
ataatgatcaataggttatatttgacatgtatcatgtatctgtttatcgaaaaacacaaatatgattattagatgattgtttccatcatgtgcaaatttg |
7980351 |
T |
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| Q |
214 |
ttggagatttaattattacaataatatttgaatgtagcataaaatttgccaagacataaccccgttctttttat |
287 |
Q |
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| T |
7980350 |
ttggagatttaattattacaataatatttgaatgtagcataaaatttgccaagacataaccccgttcttcttat |
7980277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 7980232 - 7980166
Alignment:
| Q |
304 |
gaatccattttttgcgattccgccgtccagccaccgttcaacagctgcaattccgcattgttgcagg |
370 |
Q |
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| T |
7980232 |
gaatccattttttgcgattccgccgtccagccaccgttcaacagctgcaattccgcattgttgcagg |
7980166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 25187132 - 25187017
Alignment:
| Q |
98 |
ggtcctatcgaccgttataatgatcaataagttatatttgacatgtatcatatatctgtctatcgaaaaacacaaatatgattattagatgattgtttcc |
197 |
Q |
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| T |
25187132 |
ggtcgtatcgactgttataatgatcaataagttatatttgacatgtgtcaagtatattcctatcgaaaaacacaaatgtgattattagatgattgttttc |
25187033 |
T |
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| Q |
198 |
accatgtgcaaatttg |
213 |
Q |
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| T |
25187032 |
atcatgtgtaaatttg |
25187017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 3694550 - 3694463
Alignment:
| Q |
123 |
aataagttatatttgacatgtatcatatatctgtctatcgaaaaacacaaatatgattattagatgattgtttccaccatgtgcaaat |
210 |
Q |
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| T |
3694550 |
aataagttatatttgacatatgtcatgtatgtgtctatcgaaaaacacaaaggtgattactagatgattgtttccatcatgtgcaaat |
3694463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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