View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_34 (Length: 424)
Name: NF19103_low_34
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_34 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 43310848 - 43310546
Alignment:
| Q |
17 |
atgtttctggattttatgcaagagcnnnnnnngttgctaaacagtttgatgatcttttggaggatgtagttgaagatcatatcattcgtcggaaaggagc |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43310848 |
atgtttctggattttatgcaagagcaaaaaaagttgctaaacagtttgatgatcttttggaggatgtagttgaagatcatatcaatcgtcggaaaggagc |
43310749 |
T |
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| Q |
117 |
tagtgatgagcaagtttgtttagacactgaagaccaagaaggtgactttgttgatgttttgctttggatccaaaggacagaatccctaggttttcctatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43310748 |
tagtgatgagcaagtttgtttagacactgaagaccaaggaggtgactttgttgatgttttgctttggatccaaaggacagaatccctaggttttcctatt |
43310649 |
T |
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| Q |
217 |
gacagaacagtcatcaaggccctgttattggtaagtgtaaaactaaaatctttatattttgtggagcttaagacatgcatacaaatgttttattacttca |
316 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43310648 |
gacaaaacagtcattaaggccctgttattggtaagtgtaaaactaaaatctttatattttgtggagcttaagacatgcatacaaatgttttattacttca |
43310549 |
T |
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| Q |
317 |
tac |
319 |
Q |
| |
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||| |
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| T |
43310548 |
tac |
43310546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 159 - 267
Target Start/End: Complemental strand, 43268142 - 43268034
Alignment:
| Q |
159 |
tgactttgttgatgttttgctttggatccaaaggacagaatccctaggttttcctattgacagaacagtcatcaaggccctgttattggtaagtgtaaaa |
258 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||| || || ||||||||||||| ||| ||||| ||||| || || ||||| |||||||| |
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| T |
43268142 |
tgactttgttgaagttttgctttggatccaaagaacagaatcacttggctttcctattgacaaaacggtcataaaggctctactactggtatgtgtaaaa |
43268043 |
T |
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| Q |
259 |
ctaaaatct |
267 |
Q |
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||||||||| |
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| T |
43268042 |
ctaaaatct |
43268034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 159 - 267
Target Start/End: Complemental strand, 43275032 - 43274924
Alignment:
| Q |
159 |
tgactttgttgatgttttgctttggatccaaaggacagaatccctaggttttcctattgacagaacagtcatcaaggccctgttattggtaagtgtaaaa |
258 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| || || ||||||||||| |||||| | || || || || ||||||||||||||||| |
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| T |
43275032 |
tgactttgttgatgttttgctttggatccaaaagacagaatcacttggctttcctattgatagaacaattataaaagctctcctattggtaagtgtaaaa |
43274933 |
T |
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| Q |
259 |
ctaaaatct |
267 |
Q |
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|||||||| |
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| T |
43274932 |
ttaaaatct |
43274924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 43275148 - 43275049
Alignment:
| Q |
16 |
catgtttctggattttatgcaagagcnnnnnnngttgctaaacagtttgatgatcttttggaggatgtagttgaagatcatatcattcgtcggaaaggag |
115 |
Q |
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|||||||||||||||||||||||||| || |||||||| |||||||| |||||||| |||||||||||||||||||||| ||||| |||||||| |
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| T |
43275148 |
catgtttctggattttatgcaagagcaaaaaaagtggctaaacaatttgatgaacttttggaagatgtagttgaagatcatatcaatcgtcagaaaggag |
43275049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 43268222 - 43268146
Alignment:
| Q |
52 |
gctaaacagtttgatgatcttttggaggatgtagttgaagatcatatcattcgtcggaaaggagctagtgatgagca |
128 |
Q |
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|||||||| ||||||||||||||||||| ||| |||||||||||||| | | || |||||||| |||||| ||||| |
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| T |
43268222 |
gctaaacaatttgatgatcttttggagggtgttgttgaagatcatatgaataatccgaaaggagatagtgacgagca |
43268146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 92198 - 92166
Alignment:
| Q |
163 |
tttgttgatgttttgctttggatccaaaggaca |
195 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
92198 |
tttgtggatgttttgctttggatccaaaggaca |
92166 |
T |
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