View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_35 (Length: 424)
Name: NF19103_low_35
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 40822765 - 40822465
Alignment:
| Q |
15 |
ataaatacaataacctaaggtatactttctatctgtatagacattccatgaccaatcttcatcaataaatatagccacattcttgtactagnnnnnnnnn |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40822765 |
ataaatacaataacctaaggtatactttctatctgtatagacattccatgaccaatcttcatcaataaatatagccacattcttgtactagttttatttt |
40822666 |
T |
|
| Q |
115 |
nnnnnnnacaaagaataggcctttttcgtgggtagccttcaaatatctcaaaaggcaatatcaggtcgcatataggcgagtaaaccaattttccaagtaa |
214 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40822665 |
tatttttacaaagaataggactttttcgtgggtagccttcaaatatctcaaaaggcaatatcaggtcacatataggcgagtaaaccaattttccaagtaa |
40822566 |
T |
|
| Q |
215 |
ccagtggtatcttcctgtgtcaagggtgtcccctttttcccaaagttttttatttaagtccatgggagtatcagctggtggtctacat-ccactcatacc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
40822565 |
ccagtggtatcttcctgtgtcaagggtgtcccctttttcccaaagttttttatttaagtccatgggagtgtcagctggtggtctacatcccactcatacc |
40822466 |
T |
|
| Q |
314 |
g |
314 |
Q |
| |
|
| |
|
|
| T |
40822465 |
g |
40822465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 319 - 413
Target Start/End: Complemental strand, 40822433 - 40822339
Alignment:
| Q |
319 |
gttgggacactgctcttcctttctttggagacccaaagttttttaatttcaaacattgctgcaaggtttttcttcagtttctccatttctttcat |
413 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40822433 |
gttgggacactgctcttcctttctttagagacccaaagttttttaatttcaaacattgctgcaaggtttttcttcagtttctccatttctttcat |
40822339 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 20291081 - 20291171
Alignment:
| Q |
15 |
ataaatacaataacctaaggtatactttctatctgtatagacattccatgaccaatcttcatcaataaatatagccacattcttgtactag |
105 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20291081 |
ataaatacaataacctaaggtaaactttctatctgtatagacattccatgaccaatcttcatcaataaatatagccacattcttgtactag |
20291171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 315 - 408
Target Start/End: Original strand, 20291444 - 20291537
Alignment:
| Q |
315 |
ttccgttgggacactgctcttcctttctttggagacccaaagttttttaatttcaaacattgctgcaaggtttttcttcagtttctccatttct |
408 |
Q |
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||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||||| ||||||| |||||||||||| |||||| ||||||| |
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| T |
20291444 |
ttccgttgggatactgctcttcctctctttagagacccaaagttttttaatatcaaatattgctggcaggtttttcttccgtttcttcatttct |
20291537 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 20291316 - 20291399
Alignment:
| Q |
191 |
cgagtaaaccaattttccaagtaaccagtggtatcttcctgtgtcaagggtgtcccctttttcccaaagttttttatttaagtc |
274 |
Q |
| |
|
|||||||||||||| ||||||||| | | |||||||||| ||||||| | ||||||||||| |||||||||||||||| |||| |
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| T |
20291316 |
cgagtaaaccaattctccaagtaatctttagtatcttcctatgtcaagtgcgtcccctttttgccaaagttttttatttgagtc |
20291399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 20291186 - 20291227
Alignment:
| Q |
123 |
caaagaataggcctttttcgtgggtagccttcaaatatctca |
164 |
Q |
| |
|
|||||||||||||||||| | ||||||| ||||||||||||| |
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| T |
20291186 |
caaagaataggccttttttgagggtagctttcaaatatctca |
20291227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 313
Target Start/End: Original strand, 36074590 - 36074710
Alignment:
| Q |
193 |
agtaaaccaattttccaagtaaccagtggtatcttcctgtgtcaaggg---tgtcccctttttcccaaagttttttatttaagtccatgggagtatcagc |
289 |
Q |
| |
|
|||||| ||| || |||| ||||| ||||||||||||||||| | || |||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
36074590 |
agtaaatcaagttcccaactaacctttggtatcttcctgtgtcgacgggtgtgtcccctttttcccaaagtttcaaatttagatccatgggagtatcagc |
36074689 |
T |
|
| Q |
290 |
tggtggtctacatccactcatacc |
313 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
36074690 |
---aggtctacatccactcatacc |
36074710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 313
Target Start/End: Complemental strand, 33720032 - 33719912
Alignment:
| Q |
193 |
agtaaaccaattttccaagtaaccagtggtatcttcctgtgtcaaggg---tgtcccctttttcccaaagttttttatttaagtccatgggagtatcagc |
289 |
Q |
| |
|
|||||| |||||| |||| ||||| ||||||||||||||||| | || |||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
33720032 |
agtaaatcaatttcccaactaacctttggtatcttcctgtgtcgacgggtgtgtcccctttttcccaaagtttcaaatttggatccatgggagtatcagc |
33719933 |
T |
|
| Q |
290 |
tggtggtctacatccactcatacc |
313 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
33719932 |
---aggtctacatccactcatacc |
33719912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 313
Target Start/End: Original strand, 52682416 - 52682536
Alignment:
| Q |
193 |
agtaaaccaattttccaagtaaccagtggtatcttcctgtgtcaa---gggtgtcccctttttcccaaagttttttatttaagtccatgggagtatcagc |
289 |
Q |
| |
|
|||||| |||||| |||| ||||| ||||||||||||| ||| | | ||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
52682416 |
agtaaatcaatttcccaactaacctttggtatcttcctgagtcgacaggtgtgtcccctttttcccaaagtttcaaatttggatccatgggagtatcagc |
52682515 |
T |
|
| Q |
290 |
tggtggtctacatccactcatacc |
313 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
52682516 |
---aggtctacatccactcatacc |
52682536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 52682275 - 52682316
Alignment:
| Q |
123 |
caaagaataggcctttttcgtgggtagccttcaaatatctca |
164 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||||||||||| |
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|
| T |
52682275 |
caaagaataggccttttccgagggcagccttcaaatatctca |
52682316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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