View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_37 (Length: 421)
Name: NF19103_low_37
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 10254733 - 10254372
Alignment:
| Q |
1 |
ctgttttcttgcaagagcaattatataagattaacatatattttaaacaaacaaaatgttannnnnnnaatcatacaaaatttataatnnnnnnnttgat |
100 |
Q |
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| T |
10254733 |
ctgttttcttgcaagagcaattatataagattaacatatattttaaacaaacaaaatgttatttttttaatcatacaaaatttataataaaaaatttgat |
10254634 |
T |
|
| Q |
101 |
agataacatgacacaccgacctcttaagtgtgtgacataccgacgtcttataaagtatgctagagagatgtaacacactttccttgtagtccacaaaaca |
200 |
Q |
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| T |
10254633 |
agataacatgacacaccgacttcttaagtgtgcgacataccgacgtcttataaagtatgctagagagatgtaacacactttccttgtagtccacaaaaca |
10254534 |
T |
|
| Q |
201 |
cacacgtggggggtgcaatagaaaaatctttctttcctttcttcatcatctctaaataaccaaattccatttatctaatctatttctaattgtcttcttc |
300 |
Q |
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| T |
10254533 |
cacacgtggggggtgcaatagaaaaatctttctttcctttcttcatcatctctaaataaccaaattccatttatctaatctatttctaattgtcttcttc |
10254434 |
T |
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| Q |
301 |
atgttcttttcatagaaattcctaccttattttcacaccacatacataattcatatacttat |
362 |
Q |
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| T |
10254433 |
atgttcttcttatagaaattcctacctttttttcacaccacatacataattcatatacttat |
10254372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 364 - 414
Target Start/End: Complemental strand, 10254336 - 10254286
Alignment:
| Q |
364 |
ttcttctccaacttattctaactttttatagctttctctagattcatctca |
414 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10254336 |
ttcttctccaacttgttctaactttttatagctttctctagattcatctca |
10254286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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