View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_41 (Length: 405)
Name: NF19103_low_41
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_41 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 136 - 405
Target Start/End: Complemental strand, 35095881 - 35095612
Alignment:
| Q |
136 |
ccttcactatattttattattatggcaccatcattcttcatcactttcttcttttctattaatctcatcaacattgcttattgtatttctgacatagatt |
235 |
Q |
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| T |
35095881 |
ccttcactatattttattattatggcaccatcattcttcatcactttcttcttttctattaatctcatcaacattgcttattgtatttctgacatagatt |
35095782 |
T |
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| Q |
236 |
ctctccttaaatttaaaaactctcttcaaaacaccgacgttgcattatcttcatggaatacatccatgcctccatgtaatgctgataatgcaaattgggc |
335 |
Q |
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| T |
35095781 |
ctctccttaaatttaaaaactctcttcaaaacaccgacgttgcattatcttcatggaatacatccatgcctccatgtaatgctgataatgcaaattgggc |
35095682 |
T |
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| Q |
336 |
gggcgttctttgttacaaaggacatgtttggggatttaaactcgaaaacatgaaccttaaaggcaacatt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35095681 |
gggcgttctttgttacaaaggacatgtttggggatttaaactcgaaaacatgaaccttaaaggcaacatt |
35095612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 35096016 - 35095932
Alignment:
| Q |
1 |
ccatctctctccaccttccattgctgttcttgatcaacctcagtaacatctcatcttccttctatcgctgcacgccgcaccttaa |
85 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35096016 |
ccatctctctccaccttccatagctgttcttgatcaacctcagtaacatctcatcttccttctagcgctgcacgccgcaccttaa |
35095932 |
T |
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