View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_47 (Length: 402)
Name: NF19103_low_47
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 4788659 - 4788936
Alignment:
| Q |
13 |
tgaaagaggatgatggtgatgaggatgggagtgagcatgcctttggtggtgatgttgatgaatggattgatccattgaatgaaacgatggaagtacaaat |
112 |
Q |
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| T |
4788659 |
tgaaagaggatgatggtgatgacgatgggagtgagcatgcctttggtggtgatgttgatgaatggattgatccaatgaatgaaacgatggaagtacaaat |
4788758 |
T |
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| Q |
113 |
gaataaaaagtgtgaggcatgcataaaaaatgaactctgctgtcatattcattgtgacaaatgattccatccaatccatgaaaggagggaggcagaactc |
212 |
Q |
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| T |
4788759 |
gaataaaaagtgtgaggcatgcataaaaaatgaactctgctgtcatattcattgtcacaaatgattccatccaatccatgaaaggagggagacagaactc |
4788858 |
T |
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| Q |
213 |
aaaacagagtgtgtagcatatatgataacataactccatcatttccattgtttctgtgaataaaagagagtacaatca |
290 |
Q |
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| T |
4788859 |
aaaacagagtgtgtagcatatatgataacataactccatcatttccattgtttctgtgaataaaagagagtacaatca |
4788936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 135 - 272
Target Start/End: Complemental strand, 4791544 - 4791407
Alignment:
| Q |
135 |
ataaaaaatgaactctgctgtcatattcattgtgacaaatgattccatccaatccatgaaaggagggaggcagaactcaaaacagagtgtgtagcatata |
234 |
Q |
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| T |
4791544 |
ataaaaaatgaactctgctgtcatattcattgtcacaaatgattccatccaatccatgaaaggagggagacagaactcaaaacagagtgtgtagcatata |
4791445 |
T |
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| Q |
235 |
tgataacataactccatcatttccattgtttctgtgaa |
272 |
Q |
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| T |
4791444 |
tgataacacaactccatcatttccatcgtttctgtgaa |
4791407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 121 - 272
Target Start/End: Complemental strand, 4797084 - 4796932
Alignment:
| Q |
121 |
agtgtgaggcatgcataaaaaa-tgaactctgctgtcatattcattgtgacaaatgattccatccaatccatgaaaggagggaggcagaactcaaaacag |
219 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
4797084 |
agtgtgaggcatgtataaaaaaatgaactctgctgtcatattcattgtcacaaatgattccatccaatccatgaaaggagggagacagaactcaaaagag |
4796985 |
T |
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| Q |
220 |
agtgtgtagcatatatgataacataactccatcatttccattgtttctgtgaa |
272 |
Q |
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| T |
4796984 |
agtgtgtagcatatatgataacataactccatcatttccattatttctatgaa |
4796932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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