View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19103_low_54 (Length: 378)
Name: NF19103_low_54
Description: NF19103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19103_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 43 - 359
Target Start/End: Complemental strand, 2357411 - 2357095
Alignment:
| Q |
43 |
gcattctacaatctacaccggcaatctacctctaagttgcggtggaattttgatatacctctcaaaaatttgtttgattttatccgacagtactttgctg |
142 |
Q |
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| T |
2357411 |
gcattctacaatctagaccggcaatctacctctaagttgcggtggaattttgatatacctctcaaaaatttgtttgattttatccgacagttctttgctg |
2357312 |
T |
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| Q |
143 |
ggttgatatttatagaagatgacaacaaatgtgaaaataaggagccataaggccaaattgatcatagcaatgttccttgaaatcagtgtcaaggctagaa |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2357311 |
ggttgatatttatagaagatgacaacaaatgtgaaaataaggagccataaggccaaattgatcaaagcaatgttccttgaaatcagtgtcaaggctagaa |
2357212 |
T |
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| Q |
243 |
aggaaacagcataccccaacaagagtaagagtgagattggaaaaatagtaacaggatgttgtagttgcaagagagtttggagcacacaaattaagaagta |
342 |
Q |
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| T |
2357211 |
aggaaacagcataccccaacaagagtatgagtgagattggaaaaatagtaacaggatgttgtaactgtaagagaatttggagcacacaaattaagaagta |
2357112 |
T |
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| Q |
343 |
tgccatgatgatgtaga |
359 |
Q |
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| T |
2357111 |
tgccatgatgatgtaga |
2357095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 152 - 295
Target Start/End: Complemental strand, 2089381 - 2089238
Alignment:
| Q |
152 |
ttatagaagatgacaacaaatgtgaaaataaggagccataaggccaaattgatcatagcaatgttccttgaaatcagtgtcaaggctagaaaggaaacag |
251 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||| | | |||| ||||||||||| |||||||||||||||||||| |||||| |||| |
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| T |
2089381 |
ttattgaagatgacaacaaatgtgaaaataaggagccataagaccagagttatcagagcaatgttccgtgaaatcagtgtcaaggctaaaaaggacacag |
2089282 |
T |
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| Q |
252 |
cataccccaacaagagtaagagtgagattggaaaaatagtaaca |
295 |
Q |
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| T |
2089281 |
cataccccaacatgagtaagagtgagattggaaaaatactaaca |
2089238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 296
Target Start/End: Complemental strand, 1559479 - 1559359
Alignment:
| Q |
176 |
aaaataaggagccataaggccaaattgatcatagcaatgttccttgaaatcagtgtcaaggctagaaaggaaacagcataccccaacaagagtaagagtg |
275 |
Q |
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||||||| |||||||||| | | | | |||| |||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||||| |
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| T |
1559479 |
aaaataaagagccataagacaagagtaatcacagcaatgttcagtgaaatcagtgtcaaggctaaaaaggacaaagcataccccaacaagagtaagagtg |
1559380 |
T |
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| Q |
276 |
agattggaaaaatagtaacag |
296 |
Q |
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| T |
1559379 |
agatttggaaaatactaacag |
1559359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 195 - 363
Target Start/End: Original strand, 2073316 - 2073487
Alignment:
| Q |
195 |
ccaaattgatcatagcaatgttccttgaaatcagtgtcaaggctagaaaggaaacagcataccccaacaagagtaagagtgagattggaaaaa---tagt |
291 |
Q |
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|||||||||||| |||||| || ||||||||||||||| |||| ||| ||||||||| |||||||| |||| ||||||||||| || |||| || |
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| T |
2073316 |
ccaaattgatcacagcaatattgagtgaaatcagtgtcaacgctaaaaaagaaacagcacaccccaacgagagcaagagtgagatagggaaaagaccaga |
2073415 |
T |
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| Q |
292 |
aacaggatgttgtagttgcaagagagtttggagcacacaaattaagaagtatgccatgatgatgtagacact |
363 |
Q |
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| T |
2073416 |
attaggaataggttgttgtaagagagtttggagcacccaaactaagaagtatgccataatcatgtagacact |
2073487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 1559353 - 1559308
Alignment:
| Q |
318 |
tttggagcacacaaattaagaagtatgccatgatgatgtagacact |
363 |
Q |
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||||||||| ||||| ||||||||||||||| |||||||||||||| |
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| T |
1559353 |
tttggagcagacaaactaagaagtatgccataatgatgtagacact |
1559308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 2089218 - 2089161
Alignment:
| Q |
306 |
gttgcaagagagtttggagcacacaaattaagaagtatgccatgatgatgtagacact |
363 |
Q |
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|||| ||||||||||||||||| |||| ||||||| ||||||| || ||||||||||| |
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| T |
2089218 |
gttgtaagagagtttggagcacccaaactaagaagaatgccataatcatgtagacact |
2089161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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